ISDet4

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002936 ND Dehalococcoides ethenogenes
Dehalococcoides ethenogenes 195
DNA section
IS Length : 1456 bp

Ends


IR Length : 20/24

IRL : GGGAGTGTAAAATATTTTGTGTAAATCCTTCAGATGGTAAAATACAATAA
IRR : GGGTAGTGTCAGAAATTTTGTGTATTCTCCAGAAGTACTCTGAAGTGATG

Insertion site


Left flankDirect repeatRight flankDR Length
ATTTATAAGCAGAATCTGGCTACCCTC7

DNA sequence

GGGAGTGTAAAATATTTTGTGTAAATCCTTCAGATGGTAAAATACAATAAAAACCACAATAGGAGGATTTTACTATGGCAAAGAGAGAACGGACATCAGA
TCGGCTGCCGGAAGGATGGCTGGAAGGATTCATTGAAGCTTATGACATCAAAAATGCAGACGATATCAAAGAAGCACTTAAGGATCTGATTGGCAGCACA
CTGGAATGCATGATGCAGGCAGAACTGGATGAAGAACTGGGTTATGCCAAATGGGACAGTCAAAACAAGAAAACAGATAACAGCCGGAATGGCACAACAC
CAAAGACACTTCGCTCTGAATATGGTGAGATAAAAATTGACGTTCCCCGGGATCGCCAGGGTGAGTATGAGCCGCGGATTGTACCCAAATATCAGCGTGA
GATCGACGGCTTGGATAATCAGATTATTTCGATGTACGCCAAGGGCATGAGCACGAGAGATATCGCAGAACACGTCAAATCCCTCTATGGGGTTGAGCTG
TCTGCAGATCTGATCTGCAGGATTACAGACAAGATATTGCCCGAGATCAGGGAGTGGCAGAATCGGCCGCTCAAGCCCCTGTACGCCATGATGTTCTTTG
ATGCCATTCATTACCCTGTGCGGACAGAGGGCATGGTTCAGCAGCGTGCCGTGTATCTGGCTATTGGCATCGATCTGAATGGAAGAAGTGATGTCTGCGG
CTTATGGATTGGAGAAACAGAAAGCAGCAAGTACTGGCTGAACTGCCTGAATGAATTGAAGAACCGGGGCGTCAGAGATATACTCATTTGCTCTGTTGAT
GGATTAACCGGTTTTAACGAGGCAATACGGGCCGTTTATCCAAAGACCGATATTCAACGCTGTATTGTGCATCAAGTGCGCAATTCCATGCGTTTTGTCA
GCTACAAGGATCTCAAAGAATATACGGCAGATATGAAGAAGATTTACAAGGCGCCGACTGAGGAAGCAGGACGAGCCCAGTTGGACGTGTTTGCAGAGAA
ATGGGGAAAAAAATACCCTGCAGCCATCAAGTCCTGGTTCGATCACTGGATCGAGCTGAGCACCTTTTTCAAATACCCGCCTGAAATCCGCAGGTTAATT
TATACAACGAACCGAATTGAAAACTTTAATCGACGGTTGAGGAGGGTCACTAAAACCAAATCTGCTTATCCATCAGATACGGCTTTGTTGAAATCATTGT
ATCTGGCTATTTTAGACATAACTGAGAAATGGGGCAGTGTACAGGGCTGGCACAGTATATTGGGGCAGTTAATGATTCTTTTCAACGACCGGATCCAACC
GAGTGATTATGAGTGAGGTCCCCCATTTACAGATGAGAGAACCAGCTGCTATAATCAAAACAACAAGGACAATCGTGTATATCAATATTTTAGTTGGTTG
TCCAATCATCACTTCAGAGTACTTCTGGAGAATACACAAAATTTCTGACACTACCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1242 bp413 aa751316+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKRERTSDRLPEGWLEGFIEAYDIKNADDIKEALKDLIGSTLECMMQAELDEELGYAKWDSQNKKTDNSRNGTTPKTLRSEYGEIKIDVPRDRQGEYEP
RIVPKYQREIDGLDNQIISMYAKGMSTRDIAEHVKSLYGVELSADLICRITDKILPEIREWQNRPLKPLYAMMFFDAIHYPVRTEGMVQQRAVYLAIGID
LNGRSDVCGLWIGETESSKYWLNCLNELKNRGVRDILICSVDGLTGFNEAIRAVYPKTDIQRCIVHQVRNSMRFVSYKDLKEYTADMKKIYKAPTEEAGR
AQLDVFAEKWGKKYPAAIKSWFDHWIELSTFFKYPPEIRRLIYTTNRIENFNRRLRRVTKTKSAYPSDTALLKSLYLAILDITEKWGSVQGWHSILGQLM
ILFNDRIQPSDYE

 

Blast result :
Comments
ISDet4 is 68% aa similar to ISSod18.
References
1]Seshadri,R., Adrian,L., Fouts,D.E., Eisen,J.A., Phillippy,A.M., Methe,B.A., Ward,N.L., Nelson,W.C., Deboy,R.T., Khouri,H.M., Kolonay,J.F., Dodson,R.J., Daugherty,S.C., Brinkac,L.M., Sullivan,S.A., Madupu,R., Nelson,K.E., Kang,K.H., Impraim,M., Tran,K., Robinson,J.M., Forberger,H.A., Fraser,C.M., Zinder,S.H. and Heidelberg,J.F. (2005)Science 307 (5706), 105-108.