ISDet4
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002936 | ND | Dehalococcoides ethenogenes | Dehalococcoides ethenogenes 195 |
DNA section
IS Length : 1456 bp
Ends
IR Length : 20/24
IRL : GGGAGTGTAAAATATTTTGTGTAAATCCTTCAGATGGTAAAATACAATAA
IRR : GGGTAGTGTCAGAAATTTTGTGTATTCTCCAGAAGTACTCTGAAGTGATG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATTTATAAGC | AGAATCT | GGCTACCCTC | 7 |
DNA sequence
GGGAGTGTAAAATATTTTGTGTAAATCCTTCAGATGGTAAAATACAATAAAAACCACAATAGGAGGATTTTACTATGGCAAAGAGAGAACGGACATCAGA
TCGGCTGCCGGAAGGATGGCTGGAAGGATTCATTGAAGCTTATGACATCAAAAATGCAGACGATATCAAAGAAGCACTTAAGGATCTGATTGGCAGCACA
CTGGAATGCATGATGCAGGCAGAACTGGATGAAGAACTGGGTTATGCCAAATGGGACAGTCAAAACAAGAAAACAGATAACAGCCGGAATGGCACAACAC
CAAAGACACTTCGCTCTGAATATGGTGAGATAAAAATTGACGTTCCCCGGGATCGCCAGGGTGAGTATGAGCCGCGGATTGTACCCAAATATCAGCGTGA
GATCGACGGCTTGGATAATCAGATTATTTCGATGTACGCCAAGGGCATGAGCACGAGAGATATCGCAGAACACGTCAAATCCCTCTATGGGGTTGAGCTG
TCTGCAGATCTGATCTGCAGGATTACAGACAAGATATTGCCCGAGATCAGGGAGTGGCAGAATCGGCCGCTCAAGCCCCTGTACGCCATGATGTTCTTTG
ATGCCATTCATTACCCTGTGCGGACAGAGGGCATGGTTCAGCAGCGTGCCGTGTATCTGGCTATTGGCATCGATCTGAATGGAAGAAGTGATGTCTGCGG
CTTATGGATTGGAGAAACAGAAAGCAGCAAGTACTGGCTGAACTGCCTGAATGAATTGAAGAACCGGGGCGTCAGAGATATACTCATTTGCTCTGTTGAT
GGATTAACCGGTTTTAACGAGGCAATACGGGCCGTTTATCCAAAGACCGATATTCAACGCTGTATTGTGCATCAAGTGCGCAATTCCATGCGTTTTGTCA
GCTACAAGGATCTCAAAGAATATACGGCAGATATGAAGAAGATTTACAAGGCGCCGACTGAGGAAGCAGGACGAGCCCAGTTGGACGTGTTTGCAGAGAA
ATGGGGAAAAAAATACCCTGCAGCCATCAAGTCCTGGTTCGATCACTGGATCGAGCTGAGCACCTTTTTCAAATACCCGCCTGAAATCCGCAGGTTAATT
TATACAACGAACCGAATTGAAAACTTTAATCGACGGTTGAGGAGGGTCACTAAAACCAAATCTGCTTATCCATCAGATACGGCTTTGTTGAAATCATTGT
ATCTGGCTATTTTAGACATAACTGAGAAATGGGGCAGTGTACAGGGCTGGCACAGTATATTGGGGCAGTTAATGATTCTTTTCAACGACCGGATCCAACC
GAGTGATTATGAGTGAGGTCCCCCATTTACAGATGAGAGAACCAGCTGCTATAATCAAAACAACAAGGACAATCGTGTATATCAATATTTTAGTTGGTTG
TCCAATCATCACTTCAGAGTACTTCTGGAGAATACACAAAATTTCTGACACTACCC
TCGGCTGCCGGAAGGATGGCTGGAAGGATTCATTGAAGCTTATGACATCAAAAATGCAGACGATATCAAAGAAGCACTTAAGGATCTGATTGGCAGCACA
CTGGAATGCATGATGCAGGCAGAACTGGATGAAGAACTGGGTTATGCCAAATGGGACAGTCAAAACAAGAAAACAGATAACAGCCGGAATGGCACAACAC
CAAAGACACTTCGCTCTGAATATGGTGAGATAAAAATTGACGTTCCCCGGGATCGCCAGGGTGAGTATGAGCCGCGGATTGTACCCAAATATCAGCGTGA
GATCGACGGCTTGGATAATCAGATTATTTCGATGTACGCCAAGGGCATGAGCACGAGAGATATCGCAGAACACGTCAAATCCCTCTATGGGGTTGAGCTG
TCTGCAGATCTGATCTGCAGGATTACAGACAAGATATTGCCCGAGATCAGGGAGTGGCAGAATCGGCCGCTCAAGCCCCTGTACGCCATGATGTTCTTTG
ATGCCATTCATTACCCTGTGCGGACAGAGGGCATGGTTCAGCAGCGTGCCGTGTATCTGGCTATTGGCATCGATCTGAATGGAAGAAGTGATGTCTGCGG
CTTATGGATTGGAGAAACAGAAAGCAGCAAGTACTGGCTGAACTGCCTGAATGAATTGAAGAACCGGGGCGTCAGAGATATACTCATTTGCTCTGTTGAT
GGATTAACCGGTTTTAACGAGGCAATACGGGCCGTTTATCCAAAGACCGATATTCAACGCTGTATTGTGCATCAAGTGCGCAATTCCATGCGTTTTGTCA
GCTACAAGGATCTCAAAGAATATACGGCAGATATGAAGAAGATTTACAAGGCGCCGACTGAGGAAGCAGGACGAGCCCAGTTGGACGTGTTTGCAGAGAA
ATGGGGAAAAAAATACCCTGCAGCCATCAAGTCCTGGTTCGATCACTGGATCGAGCTGAGCACCTTTTTCAAATACCCGCCTGAAATCCGCAGGTTAATT
TATACAACGAACCGAATTGAAAACTTTAATCGACGGTTGAGGAGGGTCACTAAAACCAAATCTGCTTATCCATCAGATACGGCTTTGTTGAAATCATTGT
ATCTGGCTATTTTAGACATAACTGAGAAATGGGGCAGTGTACAGGGCTGGCACAGTATATTGGGGCAGTTAATGATTCTTTTCAACGACCGGATCCAACC
GAGTGATTATGAGTGAGGTCCCCCATTTACAGATGAGAGAACCAGCTGCTATAATCAAAACAACAAGGACAATCGTGTATATCAATATTTTAGTTGGTTG
TCCAATCATCACTTCAGAGTACTTCTGGAGAATACACAAAATTTCTGACACTACCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1242 bp | 413 aa | 75 | 1316 | + | No |
Chemistry : DDE
ORF sequence :
MAKRERTSDRLPEGWLEGFIEAYDIKNADDIKEALKDLIGSTLECMMQAELDEELGYAKWDSQNKKTDNSRNGTTPKTLRSEYGEIKIDVPRDRQGEYEP
RIVPKYQREIDGLDNQIISMYAKGMSTRDIAEHVKSLYGVELSADLICRITDKILPEIREWQNRPLKPLYAMMFFDAIHYPVRTEGMVQQRAVYLAIGID
LNGRSDVCGLWIGETESSKYWLNCLNELKNRGVRDILICSVDGLTGFNEAIRAVYPKTDIQRCIVHQVRNSMRFVSYKDLKEYTADMKKIYKAPTEEAGR
AQLDVFAEKWGKKYPAAIKSWFDHWIELSTFFKYPPEIRRLIYTTNRIENFNRRLRRVTKTKSAYPSDTALLKSLYLAILDITEKWGSVQGWHSILGQLM
ILFNDRIQPSDYE
RIVPKYQREIDGLDNQIISMYAKGMSTRDIAEHVKSLYGVELSADLICRITDKILPEIREWQNRPLKPLYAMMFFDAIHYPVRTEGMVQQRAVYLAIGID
LNGRSDVCGLWIGETESSKYWLNCLNELKNRGVRDILICSVDGLTGFNEAIRAVYPKTDIQRCIVHQVRNSMRFVSYKDLKEYTADMKKIYKAPTEEAGR
AQLDVFAEKWGKKYPAAIKSWFDHWIELSTFFKYPPEIRRLIYTTNRIENFNRRLRRVTKTKSAYPSDTALLKSLYLAILDITEKWGSVQGWHSILGQLM
ILFNDRIQPSDYE
Blast result :
Comments
ISDet4 is 68% aa similar to ISSod18.
References
1]Seshadri,R., Adrian,L., Fouts,D.E., Eisen,J.A., Phillippy,A.M., Methe,B.A., Ward,N.L., Nelson,W.C., Deboy,R.T., Khouri,H.M., Kolonay,J.F., Dodson,R.J., Daugherty,S.C., Brinkac,L.M., Sullivan,S.A., Madupu,R., Nelson,K.E., Kang,K.H., Impraim,M., Tran,K., Robinson,J.M., Forberger,H.A., Fraser,C.M., Zinder,S.H. and Heidelberg,J.F. (2005)Science 307 (5706), 105-108.