ISLhe65

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000517 ND Lactobacillus helveticus
Lactobacillus helveticus DPC 4571
DNA section
IS Length : 1421 bp

Ends


Left end : TGATTAATTGCCGGAGAAAACACGGGATTTCAATCCCGTGATGAATCCGGCCTTTTTTAGTTTTTTTGCTTGTTCCCCCCTTCTTTCTTAAACATATGTT II struct. : Yes
Right end : CTGAGTTCCGTGAGTTAGGTATTTGACTAGTTCAATGTAAGATCCTAAACACTACTCAGTGTTCCCAGAAACCCGGCATTTCAGTGGGGGTGTAGTTCAT II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ATTATATATTTTTATAAAGCCAAGTtcat

DNA sequence

TGATTAATTGCCGGAGAAAACACGGGATTTCAATCCCGTGATGAATCCGGCCTTTTTTAGTTTTTTTGCTTGTTCCCCCCTTCTTTCTTAAACATATGTT
TGATATAATCTTAAAAAGAAAGGAGGGAACAAATGTGCTGAAAGGGATCAAATTAAGACTCTATCCTAATAAAATTCAACAAGGTCAGCTTGAGCAGATG
TTTGGCAATGATCGTTTTGTTTGGAATCAAATGCTGGCCATGATGAATGAGCGCTATCAGAATAATAAAGCTTTGCCTTTTTTAGGCAAGTTCAAGCTGA
ATTATCTGCTTAAGCCGCTTAAAAAAGAATATCCTTTTTTGAAAAACAGCGATTCTTCAAGCTTGCAGGTAGTTAATGAATTCCTAACTCAATCTTGGAA
GAACTTCTTTCAAGATAAAAGTGGTCAAATTGGCAAGCCTCGTTTTCATTCACGCAAGTATCTGAAAAAGTCTTATACGGGCAAGTCAATCATAAAAACT
GCAGGTAAAAGGTACTTGAAGATTCCTAAATTAGGCTATGTCAAAACCAGCAAGACTGGAGTTTTGCAAAACACTAAGGTTAAGCGTTACACTGTTCTGC
TTGAACCAACAGGAAAATATTATTTGTCTCTACAGGTAGAAATATCTGAACCAGAGAAGTACAGCTTGACTGGCAAACGAGTTGGGATTGATGTTGGCGT
GGCTGATTTAGCGATTCTGTCTAATGGGCTAAAATATCCTAGTTTTAATAGCTCTTATTTTGAAAAGAAAGCTAAAATTTGGCAGAAAAAGTATTCTCGA
CGTAGACATTTAGTTAAATTACTAGTTTTACAAAATAAGAATAAAAGGGTGCTTTGTCCTAGAAGCTTAGAAAGCTTAACTAATTGGCAAAAAGCGCAAA
AGTCAAAAGCCAAATACCAAGCTAAAGCAGCTAATCAGCGCAGAGATTATCTGCATAAACTAACTACGCATTTAGTTAAGCAATATGATGTAATTGCGAT
TGAAGATTTGAAAACCAAGAATCTTCAGAAAAATCATCATTTGGCTAAGTCAATTGCCAATGCTTCATGGCGAATGTTTAGACAAATGCTAGAATACAAA
TGCGAATGGTATGGCAAGAAACTAATTGCAGTTGATCCCAAGAACACTTCCAGAATTTGTTCAAAATGTGGCTATAACAGTGGCGCTAAGCCATTAGAGA
TTCGTGAATGGATTTGCCCTAAGTGTCAAACCAAGCATGACCGAGATATTAATGCGGCAGTTAATATCTTGCATAAAGGAAGTACAAAGCTAAATGGTCA
GGGACTGGCCATGGTAACAAGCTGAGTTCCGTGAGTTAGGTATTTGACTAGTTCAATGTAAGATCCTAAACACTACTCAGTGTTCCCAGAAACCCGGCAT
TTCAGTGGGGGTGTAGTTCAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1188 bp395 aa1381325+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKGIKLRLYPNKIQQGQLEQMFGNDRFVWNQMLAMMNERYQNNKALPFLGKFKLNYLLKPLKKEYPFLKNSDSSSLQVVNEFLTQSWKNFFQDKSGQIGK
PRFHSRKYLKKSYTGKSIIKTAGKRYLKIPKLGYVKTSKTGVLQNTKVKRYTVLLEPTGKYYLSLQVEISEPEKYSLTGKRVGIDVGVADLAILSNGLKY
PSFNSSYFEKKAKIWQKKYSRRRHLVKLLVLQNKNKRVLCPRSLESLTNWQKAQKSKAKYQAKAANQRRDYLHKLTTHLVKQYDVIAIEDLKTKNLQKNH
HLAKSIANASWRMFRQMLEYKCEWYGKKLIAVDPKNTSRICSKCGYNSGAKPLEIREWICPKCQTKHDRDINAAVNILHKGSTKLNGQGLAMVTS

 

Blast result :
Comments
ISLhe65 is 57% (ORFB) aa similar to ISEfa4.
This IS have only ORFB.
References
1] Callanan,M., Kaleta,P., O'Callaghan,J., O'Sullivan,O., Jordan,K., McAuliffe,O., Sangrador-Vegas,A., Slattery,L., Fitzgerald,G.F., Beresford,T. and Ross,R.P. (2007) J. Bacteriol. In press