ISEnfa364

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EU250284 ND Enterococcus faecalis
Enterococcus faecalis
DNA section
IS Length : 1056 bp

Ends


IR Length : 21/25

IRL : CGGATTTACAATTTAAGTGCAACACAAAAATCATAGATAAAATTCTTGTA
IRR : CGAATTGTCAAATTAAGTGCAACACTTTGTCGTAAAAAACTTCATACGGT

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTTGTATGAGATGACTAAA1

DNA sequence

CGGATTTACAATTTAAGTGCAACACAAAAATCATAGATAAAATTCTTGTATAATGGTGCGGACTAACAAATGCCTTAGGAGGAATTTTATCTATGACTTT
ATATATTCATCTTACTACCCAAGAGCGAGAAATGATATTTTTATATCATAGTTTCGGGTTTTCTTTCAGAAGAATAGGTCGGTTAATAAAACGGTCGCCC
TTAACAGTTATGAGGGAAATTAAACGACATTCCACAAAAATAAAACCGTATTCTCCTTCTTTAGCGCAGAAATCTTATCATAAAAACAAAAATGTGGTAG
AAAACGTGTCTTAGATACTTCTCCACTTAAAGAAACGGTTTGTAAACTTTTCCTAGAAGACCAATGGTCTCCTGAACAAATAGCGAATAGAATTAAAATG
GAAAAGTATGCAACGATTAGCTGCAACGCTATTTACCGTTCCATTTATCGTGGTTTGTTAAATAAAGGATTCACTACAGACAGTCGTGGTGCTTGTAGAA
AACTTAGACTCAAACGATTAGAGGACGGTCGTGGGAAATTCAATGATGCTCCTACAATACATGAGCATCCACTTGAAGCTGAGAACAGAAAGACCTTAGG
TCATTGGGAAGCCGACACAGTTATTGGTGTGAAAGGAAGTGCCTGTTTAGTTACGCTAGTTGATCGTAAATCTAGATTTCTATTAACTTCTAAAGCTGCT
TTATCTGTTTCGAACGTTATCATTAATCTATTTTCTGAGTTGCCTTTGGGTAAAAGAAGAACGATAACTCCTGACAGAAGAAGTGAATTTGCTTTATATC
AGAAGTTCAGTGAAGCTACTAATATTAATTGTTATTTTTCTGATTCACAGGCTCCTTAGCAACGAGGAACCAATGAAAATACGAATGGACTATTACGAGA
GTACCTGTCAAAAGGGAAAGATATGACCCTAATTCCCGATAGTTATATTCAATCATTCGTGCATAAATTAAACACTAGACCACGAAAATACTTAAACTGG
AAAACACCGTATGAAGTTTTTTACGACAAAGTGTTGCACTTAATTTGACAATTCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
956 bp327 aa931048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTLYIHLTTQEREMIFLYHSFGFSFRRIGRLIKRSPLTVMREIKRHSTKIKPYSPSLAQKSYHKNKNVVENVSKQKCGRKRVLDTSPLKETVCKLFLEDQ
WSPEQIANRIKMEKYATISCNAIYRSIYRGLLNKGFTTDSRGACRKLRLKRLEDGRGKFNDAPTIHEHPLEAENRKTLGHWEADTVIGVKGSACLVTLVD
RKSRFLLTSKAALSVSNVIINLFSELPLGKRRTITPDRRSEFALYQKFSEATNINCYFSDSQAP*QRGTNENTNGLLREYLSKGKDMTLIPDSYIQSFVH
KLNTRPRKYLNWKTPYEVFYDKVLHLI

 

Blast result :
Comments
Presumed translational frameshift region 284-314. Unusual for IS30 family. In-frame stop codon at 857-859. Presumed non-functional transposase. The ORF is a putative fusion protein.
References
1] Boyd,D.A., Fawcett,D., Gillani,N., Willey,B.M. and Mulvey,M.R.(2007) Direct submission.