ISEnfa364
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EU250284 | ND | Enterococcus faecalis | Enterococcus faecalis |
DNA section
IS Length : 1056 bp
Ends
IR Length : 21/25
IRL : CGGATTTACAATTTAAGTGCAACACAAAAATCATAGATAAAATTCTTGTA
IRR : CGAATTGTCAAATTAAGTGCAACACTTTGTCGTAAAAAACTTCATACGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTTTGTATG | A | GATGACTAAA | 1 |
DNA sequence
CGGATTTACAATTTAAGTGCAACACAAAAATCATAGATAAAATTCTTGTATAATGGTGCGGACTAACAAATGCCTTAGGAGGAATTTTATCTATGACTTT
ATATATTCATCTTACTACCCAAGAGCGAGAAATGATATTTTTATATCATAGTTTCGGGTTTTCTTTCAGAAGAATAGGTCGGTTAATAAAACGGTCGCCC
TTAACAGTTATGAGGGAAATTAAACGACATTCCACAAAAATAAAACCGTATTCTCCTTCTTTAGCGCAGAAATCTTATCATAAAAACAAAAATGTGGTAG
AAAACGTGTCTTAGATACTTCTCCACTTAAAGAAACGGTTTGTAAACTTTTCCTAGAAGACCAATGGTCTCCTGAACAAATAGCGAATAGAATTAAAATG
GAAAAGTATGCAACGATTAGCTGCAACGCTATTTACCGTTCCATTTATCGTGGTTTGTTAAATAAAGGATTCACTACAGACAGTCGTGGTGCTTGTAGAA
AACTTAGACTCAAACGATTAGAGGACGGTCGTGGGAAATTCAATGATGCTCCTACAATACATGAGCATCCACTTGAAGCTGAGAACAGAAAGACCTTAGG
TCATTGGGAAGCCGACACAGTTATTGGTGTGAAAGGAAGTGCCTGTTTAGTTACGCTAGTTGATCGTAAATCTAGATTTCTATTAACTTCTAAAGCTGCT
TTATCTGTTTCGAACGTTATCATTAATCTATTTTCTGAGTTGCCTTTGGGTAAAAGAAGAACGATAACTCCTGACAGAAGAAGTGAATTTGCTTTATATC
AGAAGTTCAGTGAAGCTACTAATATTAATTGTTATTTTTCTGATTCACAGGCTCCTTAGCAACGAGGAACCAATGAAAATACGAATGGACTATTACGAGA
GTACCTGTCAAAAGGGAAAGATATGACCCTAATTCCCGATAGTTATATTCAATCATTCGTGCATAAATTAAACACTAGACCACGAAAATACTTAAACTGG
AAAACACCGTATGAAGTTTTTTACGACAAAGTGTTGCACTTAATTTGACAATTCG
ATATATTCATCTTACTACCCAAGAGCGAGAAATGATATTTTTATATCATAGTTTCGGGTTTTCTTTCAGAAGAATAGGTCGGTTAATAAAACGGTCGCCC
TTAACAGTTATGAGGGAAATTAAACGACATTCCACAAAAATAAAACCGTATTCTCCTTCTTTAGCGCAGAAATCTTATCATAAAAACAAAAATGTGGTAG
AAAACGTGTCTTAGATACTTCTCCACTTAAAGAAACGGTTTGTAAACTTTTCCTAGAAGACCAATGGTCTCCTGAACAAATAGCGAATAGAATTAAAATG
GAAAAGTATGCAACGATTAGCTGCAACGCTATTTACCGTTCCATTTATCGTGGTTTGTTAAATAAAGGATTCACTACAGACAGTCGTGGTGCTTGTAGAA
AACTTAGACTCAAACGATTAGAGGACGGTCGTGGGAAATTCAATGATGCTCCTACAATACATGAGCATCCACTTGAAGCTGAGAACAGAAAGACCTTAGG
TCATTGGGAAGCCGACACAGTTATTGGTGTGAAAGGAAGTGCCTGTTTAGTTACGCTAGTTGATCGTAAATCTAGATTTCTATTAACTTCTAAAGCTGCT
TTATCTGTTTCGAACGTTATCATTAATCTATTTTCTGAGTTGCCTTTGGGTAAAAGAAGAACGATAACTCCTGACAGAAGAAGTGAATTTGCTTTATATC
AGAAGTTCAGTGAAGCTACTAATATTAATTGTTATTTTTCTGATTCACAGGCTCCTTAGCAACGAGGAACCAATGAAAATACGAATGGACTATTACGAGA
GTACCTGTCAAAAGGGAAAGATATGACCCTAATTCCCGATAGTTATATTCAATCATTCGTGCATAAATTAAACACTAGACCACGAAAATACTTAAACTGG
AAAACACCGTATGAAGTTTTTTACGACAAAGTGTTGCACTTAATTTGACAATTCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
956 bp | 327 aa | 93 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MTLYIHLTTQEREMIFLYHSFGFSFRRIGRLIKRSPLTVMREIKRHSTKIKPYSPSLAQKSYHKNKNVVENVSKQKCGRKRVLDTSPLKETVCKLFLEDQ
WSPEQIANRIKMEKYATISCNAIYRSIYRGLLNKGFTTDSRGACRKLRLKRLEDGRGKFNDAPTIHEHPLEAENRKTLGHWEADTVIGVKGSACLVTLVD
RKSRFLLTSKAALSVSNVIINLFSELPLGKRRTITPDRRSEFALYQKFSEATNINCYFSDSQAP*QRGTNENTNGLLREYLSKGKDMTLIPDSYIQSFVH
KLNTRPRKYLNWKTPYEVFYDKVLHLI
WSPEQIANRIKMEKYATISCNAIYRSIYRGLLNKGFTTDSRGACRKLRLKRLEDGRGKFNDAPTIHEHPLEAENRKTLGHWEADTVIGVKGSACLVTLVD
RKSRFLLTSKAALSVSNVIINLFSELPLGKRRTITPDRRSEFALYQKFSEATNINCYFSDSQAP*QRGTNENTNGLLREYLSKGKDMTLIPDSYIQSFVH
KLNTRPRKYLNWKTPYEVFYDKVLHLI
Blast result :
Comments
Presumed translational frameshift region 284-314. Unusual for IS30 family. In-frame stop codon at 857-859. Presumed non-functional transposase. The ORF is a putative fusion protein.
References
1] Boyd,D.A., Fawcett,D., Gillani,N., Willey,B.M. and Mulvey,M.R.(2007) Direct submission.