ISRta4
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Ralstonia taiwanensis | Ralstonia taiwanensis LMG19424 |
DNA section
IS Length : 1915 bp
Ends
Left end : GGACTTCGTAGATGCACCGGCCCTCTCCCCCGCCCGCCCCTCTCCCGCAAGCGGGAGAGGGGAGCAAAGAGGCGGGAGGGAAAAGTCCTTTGGGCTCGCC
Right end : TCGATGCCTCATGCTCAACTTGCCTTGCAAACCGGGGCGCGTTCATATAAGTAGGTCGCCGGCTACGCCGGCGAAACAGCAGCGCCCGCCAAGCACGACA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAAGCGATGGCC | CCGCATTCAACAC | 0 |
DNA sequence
GGACTTCGTAGATGCACCGGCCCTCTCCCCCGCCCGCCCCTCTCCCGCAAGCGGGAGAGGGGAGCAAAGAGGCGGGAGGGAAAAGTCCTTTGGGCTCGCC
AGCGATAGCGCGTGCGAGCGCAGCGACGCACTCCGTGCCCGAGCAATAGACCTGAGATTGGGAGTGCGCGCAGCGCAGCCGAAGGCGTCCCACCAATAGC
GCCAGCAGCAGGCTGCCTACACCCTGTTGGGATCGTTCAATAGTGGGTGATCGTAGGCACCGTCCCTGACTCACATAGCGTTAGCAGGTTCGAACGGGCA
CCCACGCCAAACGGAAATCACCACCGCCTGAACCGCCAACGCCGCGGAATTGATTGCCAGCCGCATAGGCGACGCGCTTCTTGCCTACTTCTTGGCGCTC
GGCCAAGAAGATGGAATGAACGCGCCCCCGGCCTCTCCCGATCAAAGAGGCGCTGGTAGTTCAGTTGTGCTTCTGGGGAACGTGACAGGATAGGTGGGCC
CTCCATCACGAAACGGCATCGATGTGCCAGAGTGGAAGTTCGCACAATCCACACAGGATGGAGGAACCCGAAATGAATACTACGACTTACGGTCTGGACA
TTGCAAAGGGTGTTTTCCAGCTCTATTGGGTTGAGCCTTCAGGCGAGTGTTTCAACCGTCGCTTTACGCGTAAGGCCCTGCTCAACTTCCTGGCCAAGCG
CGCGCCTGGTCGTGTCGCACTGGAGGCTTGTGGCAGCGCACACTGGTGGGCACGCCAGCTCGCCGCACTTGGCCATAAGCCCGTGCTCTTGCATGCCGCC
TTTGTACGTCCCTTTGTGCAGACCAACAAGACCGACGTGGCCGATGCCAAGGCCATCTGGACCGCCGTACATCAGCCCGGCATGCGCCAAGTCGCGCGCA
AGACCGAAACACAGCAGGCCATCCTTGCCCTGCATGGATTCCGCGCCCTGCGCGTGAAGATGCGCACCATGTTGATCAACCAGTTGCGCGGCGTGCTGTT
CGAGTTCGGCATTCACTTCCGTCGCGGACGCCGTGCCGGATTGGAAGAGATCAAGCAACATATGGCCGAACTCGAACAGCAGTTGCCGCGCGTGCTGTTC
GATTCCGTGGCCGAGCAATTACAAGACATCGCACGCCTGGACGAGGAAATCGGGCAAATCGAAATCCGCTTGAACACCTGGCTCAAGGAAGATCACGATT
GCCAGACCGTCGCTGCCATTCCCGGGATTGGCCCGCTCACCGCGACAGCGCTGGTGGCCACCATTGGCGACGTGCACGCCTTCCGCTCAGGCCGGCAACT
GGCGGCATTCCTTGGCTTAGTGCCAAGACAGCGCGGTACCGGTGGCAAAGTGAATCTCGGGGGCATCAGCAAACGCGGCGACACCTATCTGCGCACCTTG
CTGATTCACGGTGCGCGGATCGTGCTCAGTCACTTGCGTCGCAAGGGGCAAAGCCATTGGAGTACGGCGCTGGTCCAGCGCCGTCCGGCTAACGTCGTAG
GCGTCGCCATGGCCAACAAGATGGCGCGCACGGCCTGGGCTCTGTTGGCCCACAACCGAACCTATGACCGCGACTATGTCTCGGTCAAGCTTGCCTAACG
GCAGGCTGAGCTAGCAAGCAGGGAATCCGTTCACAGGTTGCGACGGTAAGTGGAGGTGATGGCAAAACAGGTTGGACCGCGGGAGCGGAAACCCGACGAC
CTACTGGTGCCACAACGAGCACGCCAAAAAGTGAGGGACGTTCCCGGCGAATACCATCAGGGCCCGCAGGCTTGGCCTGCTAAACAAGGCCGGATATAAG
TCTGCAACCAACCGTTCGATGCCTCATGCTCAACTTGCCTTGCAAACCGGGGCGCGTTCATATAAGTAGGTCGCCGGCTACGCCGGCGAAACAGCAGCGC
CCGCCAAGCACGACA
AGCGATAGCGCGTGCGAGCGCAGCGACGCACTCCGTGCCCGAGCAATAGACCTGAGATTGGGAGTGCGCGCAGCGCAGCCGAAGGCGTCCCACCAATAGC
GCCAGCAGCAGGCTGCCTACACCCTGTTGGGATCGTTCAATAGTGGGTGATCGTAGGCACCGTCCCTGACTCACATAGCGTTAGCAGGTTCGAACGGGCA
CCCACGCCAAACGGAAATCACCACCGCCTGAACCGCCAACGCCGCGGAATTGATTGCCAGCCGCATAGGCGACGCGCTTCTTGCCTACTTCTTGGCGCTC
GGCCAAGAAGATGGAATGAACGCGCCCCCGGCCTCTCCCGATCAAAGAGGCGCTGGTAGTTCAGTTGTGCTTCTGGGGAACGTGACAGGATAGGTGGGCC
CTCCATCACGAAACGGCATCGATGTGCCAGAGTGGAAGTTCGCACAATCCACACAGGATGGAGGAACCCGAAATGAATACTACGACTTACGGTCTGGACA
TTGCAAAGGGTGTTTTCCAGCTCTATTGGGTTGAGCCTTCAGGCGAGTGTTTCAACCGTCGCTTTACGCGTAAGGCCCTGCTCAACTTCCTGGCCAAGCG
CGCGCCTGGTCGTGTCGCACTGGAGGCTTGTGGCAGCGCACACTGGTGGGCACGCCAGCTCGCCGCACTTGGCCATAAGCCCGTGCTCTTGCATGCCGCC
TTTGTACGTCCCTTTGTGCAGACCAACAAGACCGACGTGGCCGATGCCAAGGCCATCTGGACCGCCGTACATCAGCCCGGCATGCGCCAAGTCGCGCGCA
AGACCGAAACACAGCAGGCCATCCTTGCCCTGCATGGATTCCGCGCCCTGCGCGTGAAGATGCGCACCATGTTGATCAACCAGTTGCGCGGCGTGCTGTT
CGAGTTCGGCATTCACTTCCGTCGCGGACGCCGTGCCGGATTGGAAGAGATCAAGCAACATATGGCCGAACTCGAACAGCAGTTGCCGCGCGTGCTGTTC
GATTCCGTGGCCGAGCAATTACAAGACATCGCACGCCTGGACGAGGAAATCGGGCAAATCGAAATCCGCTTGAACACCTGGCTCAAGGAAGATCACGATT
GCCAGACCGTCGCTGCCATTCCCGGGATTGGCCCGCTCACCGCGACAGCGCTGGTGGCCACCATTGGCGACGTGCACGCCTTCCGCTCAGGCCGGCAACT
GGCGGCATTCCTTGGCTTAGTGCCAAGACAGCGCGGTACCGGTGGCAAAGTGAATCTCGGGGGCATCAGCAAACGCGGCGACACCTATCTGCGCACCTTG
CTGATTCACGGTGCGCGGATCGTGCTCAGTCACTTGCGTCGCAAGGGGCAAAGCCATTGGAGTACGGCGCTGGTCCAGCGCCGTCCGGCTAACGTCGTAG
GCGTCGCCATGGCCAACAAGATGGCGCGCACGGCCTGGGCTCTGTTGGCCCACAACCGAACCTATGACCGCGACTATGTCTCGGTCAAGCTTGCCTAACG
GCAGGCTGAGCTAGCAAGCAGGGAATCCGTTCACAGGTTGCGACGGTAAGTGGAGGTGATGGCAAAACAGGTTGGACCGCGGGAGCGGAAACCCGACGAC
CTACTGGTGCCACAACGAGCACGCCAAAAAGTGAGGGACGTTCCCGGCGAATACCATCAGGGCCCGCAGGCTTGGCCTGCTAAACAAGGCCGGATATAAG
TCTGCAACCAACCGTTCGATGCCTCATGCTCAACTTGCCTTGCAAACCGGGGCGCGTTCATATAAGTAGGTCGCCGGCTACGCCGGCGAAACAGCAGCGC
CCGCCAAGCACGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1026 bp | 341 aa | 573 | 1598 | + | No |
Chemistry : DEDD
ORF sequence :
MNTTTYGLDIAKGVFQLYWVEPSGECFNRRFTRKALLNFLAKRAPGRVALEACGSAHWWARQLAALGHKPVLLHAAFVRPFVQTNKTDVADAKAIWTAVH
QPGMRQVARKTETQQAILALHGFRALRVKMRTMLINQLRGVLFEFGIHFRRGRRAGLEEIKQHMAELEQQLPRVLFDSVAEQLQDIARLDEEIGQIEIRL
NTWLKEDHDCQTVAAIPGIGPLTATALVATIGDVHAFRSGRQLAAFLGLVPRQRGTGGKVNLGGISKRGDTYLRTLLIHGARIVLSHLRRKGQSHWSTAL
VQRRPANVVGVAMANKMARTAWALLAHNRTYDRDYVSVKLA
QPGMRQVARKTETQQAILALHGFRALRVKMRTMLINQLRGVLFEFGIHFRRGRRAGLEEIKQHMAELEQQLPRVLFDSVAEQLQDIARLDEEIGQIEIRL
NTWLKEDHDCQTVAAIPGIGPLTATALVATIGDVHAFRSGRQLAAFLGLVPRQRGTGGKVNLGGISKRGDTYLRTLLIHGARIVLSHLRRKGQSHWSTAL
VQRRPANVVGVAMANKMARTAWALLAHNRTYDRDYVSVKLA
Blast result :
Comments
ISRta4 is 71% aa similar to ISAfe1.
References
1] Boivin (2008) Direct submission.