ISRta4

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Ralstonia taiwanensis
Ralstonia taiwanensis LMG19424
DNA section
IS Length : 1915 bp

Ends


Left end : GGACTTCGTAGATGCACCGGCCCTCTCCCCCGCCCGCCCCTCTCCCGCAAGCGGGAGAGGGGAGCAAAGAGGCGGGAGGGAAAAGTCCTTTGGGCTCGCC
Right end : TCGATGCCTCATGCTCAACTTGCCTTGCAAACCGGGGCGCGTTCATATAAGTAGGTCGCCGGCTACGCCGGCGAAACAGCAGCGCCCGCCAAGCACGACA

Insertion site


Left flankDirect repeatRight flankDR Length
GAAGCGATGGCCCCGCATTCAACAC0

DNA sequence

GGACTTCGTAGATGCACCGGCCCTCTCCCCCGCCCGCCCCTCTCCCGCAAGCGGGAGAGGGGAGCAAAGAGGCGGGAGGGAAAAGTCCTTTGGGCTCGCC
AGCGATAGCGCGTGCGAGCGCAGCGACGCACTCCGTGCCCGAGCAATAGACCTGAGATTGGGAGTGCGCGCAGCGCAGCCGAAGGCGTCCCACCAATAGC
GCCAGCAGCAGGCTGCCTACACCCTGTTGGGATCGTTCAATAGTGGGTGATCGTAGGCACCGTCCCTGACTCACATAGCGTTAGCAGGTTCGAACGGGCA
CCCACGCCAAACGGAAATCACCACCGCCTGAACCGCCAACGCCGCGGAATTGATTGCCAGCCGCATAGGCGACGCGCTTCTTGCCTACTTCTTGGCGCTC
GGCCAAGAAGATGGAATGAACGCGCCCCCGGCCTCTCCCGATCAAAGAGGCGCTGGTAGTTCAGTTGTGCTTCTGGGGAACGTGACAGGATAGGTGGGCC
CTCCATCACGAAACGGCATCGATGTGCCAGAGTGGAAGTTCGCACAATCCACACAGGATGGAGGAACCCGAAATGAATACTACGACTTACGGTCTGGACA
TTGCAAAGGGTGTTTTCCAGCTCTATTGGGTTGAGCCTTCAGGCGAGTGTTTCAACCGTCGCTTTACGCGTAAGGCCCTGCTCAACTTCCTGGCCAAGCG
CGCGCCTGGTCGTGTCGCACTGGAGGCTTGTGGCAGCGCACACTGGTGGGCACGCCAGCTCGCCGCACTTGGCCATAAGCCCGTGCTCTTGCATGCCGCC
TTTGTACGTCCCTTTGTGCAGACCAACAAGACCGACGTGGCCGATGCCAAGGCCATCTGGACCGCCGTACATCAGCCCGGCATGCGCCAAGTCGCGCGCA
AGACCGAAACACAGCAGGCCATCCTTGCCCTGCATGGATTCCGCGCCCTGCGCGTGAAGATGCGCACCATGTTGATCAACCAGTTGCGCGGCGTGCTGTT
CGAGTTCGGCATTCACTTCCGTCGCGGACGCCGTGCCGGATTGGAAGAGATCAAGCAACATATGGCCGAACTCGAACAGCAGTTGCCGCGCGTGCTGTTC
GATTCCGTGGCCGAGCAATTACAAGACATCGCACGCCTGGACGAGGAAATCGGGCAAATCGAAATCCGCTTGAACACCTGGCTCAAGGAAGATCACGATT
GCCAGACCGTCGCTGCCATTCCCGGGATTGGCCCGCTCACCGCGACAGCGCTGGTGGCCACCATTGGCGACGTGCACGCCTTCCGCTCAGGCCGGCAACT
GGCGGCATTCCTTGGCTTAGTGCCAAGACAGCGCGGTACCGGTGGCAAAGTGAATCTCGGGGGCATCAGCAAACGCGGCGACACCTATCTGCGCACCTTG
CTGATTCACGGTGCGCGGATCGTGCTCAGTCACTTGCGTCGCAAGGGGCAAAGCCATTGGAGTACGGCGCTGGTCCAGCGCCGTCCGGCTAACGTCGTAG
GCGTCGCCATGGCCAACAAGATGGCGCGCACGGCCTGGGCTCTGTTGGCCCACAACCGAACCTATGACCGCGACTATGTCTCGGTCAAGCTTGCCTAACG
GCAGGCTGAGCTAGCAAGCAGGGAATCCGTTCACAGGTTGCGACGGTAAGTGGAGGTGATGGCAAAACAGGTTGGACCGCGGGAGCGGAAACCCGACGAC
CTACTGGTGCCACAACGAGCACGCCAAAAAGTGAGGGACGTTCCCGGCGAATACCATCAGGGCCCGCAGGCTTGGCCTGCTAAACAAGGCCGGATATAAG
TCTGCAACCAACCGTTCGATGCCTCATGCTCAACTTGCCTTGCAAACCGGGGCGCGTTCATATAAGTAGGTCGCCGGCTACGCCGGCGAAACAGCAGCGC
CCGCCAAGCACGACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1026 bp341 aa5731598+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNTTTYGLDIAKGVFQLYWVEPSGECFNRRFTRKALLNFLAKRAPGRVALEACGSAHWWARQLAALGHKPVLLHAAFVRPFVQTNKTDVADAKAIWTAVH
QPGMRQVARKTETQQAILALHGFRALRVKMRTMLINQLRGVLFEFGIHFRRGRRAGLEEIKQHMAELEQQLPRVLFDSVAEQLQDIARLDEEIGQIEIRL
NTWLKEDHDCQTVAAIPGIGPLTATALVATIGDVHAFRSGRQLAAFLGLVPRQRGTGGKVNLGGISKRGDTYLRTLLIHGARIVLSHLRRKGQSHWSTAL
VQRRPANVVGVAMANKMARTAWALLAHNRTYDRDYVSVKLA

 

Blast result :
Comments
ISRta4 is 71% aa similar to ISAfe1.
References
1] Boivin (2008) Direct submission.