ISHma11

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006393 ND Haloarcula marismortui
Haloarcula marismortui ATCC 43049 plasmid pNG500
DNA section
IS Length : 929 bp

Ends


IR Length : 15/16

IRL : TGCCGCGTTGAATAGAGATCTAATCGGCGGTTATCACGGGTTAGAAGGAC
IRR : TGCCGTGTTGAATAGATGCTGAGTCGCGGTTAGAGTGGTTCACAGAGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
TCAACAGAGCAGAAAGAAGTGCTCTGTTGA8

DNA sequence

TGCCGCGTTGAATAGAGATCTAATCGGCGGTTATCACGGGTTAGAAGGACGAAGCCGAGGAAATCAATTCTAGCTATGGAAGTCAATCTCCTCGACTTCG
TTGAGCAGTGTCGGCAGCTAGTCAAACAAGCGTTGGGGAAGCACGCGGGCGAGCCCGCCAGCGACGGGTTCGCCCGCTGGAAGCACGTCGTTCTCCACTG
TTTCCGAGTCGAAGACGGCCACAGCTACCGTGAAACACCGAATCGGCTACAGTATATGACCGATATTTGTGATGCACTTGGTCTAGATCCGGACGATCTA
CCTGACTTTACCACGGTCTACAAGTCATTCGACCGGCTGGAAATGTGGGTGTGGCGGGCGCTGCTGCGCGTTTCAGCGCAGCAGCACCCGCAGTCTGGCC
ACGCCGCACTCGATAGCACGTTCTTCGACCGCCGCTCAGCCTCATCATACTACCGCCAGCGGTCGGGAAGCAACGTTCAAACACTGAAAGTGACGACACT
AACCGATAGAGAATCTCTTGCTGTCCTTGACGTGCACATATCTGCCCGGTGGAAACACGATACGAAGACCGGGACGCAGGTCGTCCGCCGGAACGCGGAC
GACCTGCTGTCCGTGGCTGCAGACAAAGCCTTCCACAGCTGGATCACGAAATACGAGTTCTACGCGCTTGGCGTCGAACCACTCATTTTACAGCGTGGAT
CAAGACCGTTGACGCTAGGACACAACGCACTCATCCGGACAAAAGGCTACTCTCAACGCTGGATGGCCGAAACATCGTATTCGACAACGAAGCGCTCGCT
CGGCGACACCGTGCGAGCGCTCGGCTGGTATCGACAGTTCCGTGAGATTGTCCTGATGTTCGCCATCTCGAACATAGAACCGCTCTGTGAACCACTCTAA
CCGCGACTCAGCATCTATTCAACACGGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
825 bp274 aa76900+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEVNLLDFVEQCRQLVKQALGKHAGEPASDGFARWKHVVLHCFRVEDGHSYRETPNRLQYMTDICDALGLDPDDLPDFTTVYKSFDRLEMWVWRALLRVS
AQQHPQSGHAALDSTFFDRRSASSYYRQRSGSNVQTLKVTTLTDRESLAVLDVHISARWKHDTKTGTQVVRRNADDLLSVAADKAFHSWITKYEFYALGV
EPLILQRGSRPLTLGHNALIRTKGYSQRWMAETSYSTTKRSLGDTVRALGWYRQFREIVLMFAISNIEPLCEPL

 

Blast result :
Comments
ISHma11 is 95% aa similar to ISNph4.
References
1] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234