ISShes8

  • Family IS200/IS605
  • Group IS200
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008321 ND Shewanella sp.
Shewanella sp. MR-4
DNA section
IS Length : 611 bp

Ends


Left end : TTTTAGCCCAAAACCACCTACTTCAGTAGGTGGTTATCATCATTTGAGGCTTTGCCTGTATACCTACCCATGTTAAATGCATCTTTGATTTTTAGCGAAG II struct. : Yes
Right end : AAAGTAGAGCGGCAAGAGCAGGGTCAACTTGCTCTTGAATAAAGGCCCCCTTTTAGGGGGTTAAAACAAAGCCACCTTCTTCAGAAGGTGGATTCTTTAC II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
GAGCTGGTATTTTTATTTTGATACTATttac

DNA sequence

TTTTAGCCCAAAACCACCTACTTCAGTAGGTGGTTATCATCATTTGAGGCTTTGCCTGTATACCTACCCATGTTAAATGCATCTTTGATTTTTAGCGAAG
TCAAAAGAGGCAAATAACATGAGTAGATACGAGCAAGCATCGCATGTGTTCTGGCGATGTCAATATCATATAGTCTGGACACCAAAGTACCGCTTTCGGA
TATTGAAAGGTAATGTCGGAAAAGAGGTTTATCGATGCATTCAGGTTTATTGCCATCAAATGGGATGCATAGTCATGGAGCTAAATGTTCAAGTTGACGA
TGTCCATTTAGTGGTGAAGGTACCTCCGAAGATATCTATATCGAATTTAATGGGGGCGTTAAAAGGTAAGGTAGCTTTGAAAATATTCAGTAAATTTCCT
TACCTACGTAAGAATAAACTTTGGGGAAATCATTTTTGGCAGAGAGGATACTTCGTCGATTCGATTGGAATTAACGAGGAAATAATCCGTAGATACGTTA
GGCATCAAGAGAAAGTAGAGCGGCAAGAGCAGGGTCAACTTGCTCTTGAATAAAGGCCCCCTTTTAGGGGGTTAAAACAAAGCCACCTTCTTCAGAAGGT
GGATTCTTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
435 bp144 aa119553+No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MSRYEQASHVFWRCQYHIVWTPKYRFRILKGNVGKEVYRCIQVYCHQMGCIVMELNVQVDDVHLVVKVPPKISISNLMGALKGKVALKIFSKFPYLRKNK
LWGNHFWQRGYFVDSIGINEEIIRRYVRHQEKVERQEQGQLALE

 

Blast result :
Comments
There is one copy of ISShes8 encoded in the Shewanella species MR-4 genome. The ISShes8 transposase has 63% identity with the ISSod23 transposase.
References
1] Romine, M. (2008) Direct submission.