ISShes8
- Family IS200/IS605
- Group IS200
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008321 | ND | Shewanella sp. | Shewanella sp. MR-4 |
DNA section
IS Length : 611 bp
Ends
Left end : TTTTAGCCCAAAACCACCTACTTCAGTAGGTGGTTATCATCATTTGAGGCTTTGCCTGTATACCTACCCATGTTAAATGCATCTTTGATTTTTAGCGAAG II struct. : Yes
Right end : AAAGTAGAGCGGCAAGAGCAGGGTCAACTTGCTCTTGAATAAAGGCCCCCTTTTAGGGGGTTAAAACAAAGCCACCTTCTTCAGAAGGTGGATTCTTTAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
GAGCTGGTATTT | TTAT | TTTGATACTAT | ttac |
DNA sequence
TTTTAGCCCAAAACCACCTACTTCAGTAGGTGGTTATCATCATTTGAGGCTTTGCCTGTATACCTACCCATGTTAAATGCATCTTTGATTTTTAGCGAAG
TCAAAAGAGGCAAATAACATGAGTAGATACGAGCAAGCATCGCATGTGTTCTGGCGATGTCAATATCATATAGTCTGGACACCAAAGTACCGCTTTCGGA
TATTGAAAGGTAATGTCGGAAAAGAGGTTTATCGATGCATTCAGGTTTATTGCCATCAAATGGGATGCATAGTCATGGAGCTAAATGTTCAAGTTGACGA
TGTCCATTTAGTGGTGAAGGTACCTCCGAAGATATCTATATCGAATTTAATGGGGGCGTTAAAAGGTAAGGTAGCTTTGAAAATATTCAGTAAATTTCCT
TACCTACGTAAGAATAAACTTTGGGGAAATCATTTTTGGCAGAGAGGATACTTCGTCGATTCGATTGGAATTAACGAGGAAATAATCCGTAGATACGTTA
GGCATCAAGAGAAAGTAGAGCGGCAAGAGCAGGGTCAACTTGCTCTTGAATAAAGGCCCCCTTTTAGGGGGTTAAAACAAAGCCACCTTCTTCAGAAGGT
GGATTCTTTAC
TCAAAAGAGGCAAATAACATGAGTAGATACGAGCAAGCATCGCATGTGTTCTGGCGATGTCAATATCATATAGTCTGGACACCAAAGTACCGCTTTCGGA
TATTGAAAGGTAATGTCGGAAAAGAGGTTTATCGATGCATTCAGGTTTATTGCCATCAAATGGGATGCATAGTCATGGAGCTAAATGTTCAAGTTGACGA
TGTCCATTTAGTGGTGAAGGTACCTCCGAAGATATCTATATCGAATTTAATGGGGGCGTTAAAAGGTAAGGTAGCTTTGAAAATATTCAGTAAATTTCCT
TACCTACGTAAGAATAAACTTTGGGGAAATCATTTTTGGCAGAGAGGATACTTCGTCGATTCGATTGGAATTAACGAGGAAATAATCCGTAGATACGTTA
GGCATCAAGAGAAAGTAGAGCGGCAAGAGCAGGGTCAACTTGCTCTTGAATAAAGGCCCCCTTTTAGGGGGTTAAAACAAAGCCACCTTCTTCAGAAGGT
GGATTCTTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
435 bp | 144 aa | 119 | 553 | + | No |
Chemistry : Y1
ORF sequence :
MSRYEQASHVFWRCQYHIVWTPKYRFRILKGNVGKEVYRCIQVYCHQMGCIVMELNVQVDDVHLVVKVPPKISISNLMGALKGKVALKIFSKFPYLRKNK
LWGNHFWQRGYFVDSIGINEEIIRRYVRHQEKVERQEQGQLALE
LWGNHFWQRGYFVDSIGINEEIIRRYVRHQEKVERQEQGQLALE
Blast result :
Comments
There is one copy of ISShes8 encoded in the Shewanella species MR-4 genome. The ISShes8 transposase has 63% identity with the ISSod23 transposase.
References
1] Romine, M. (2008) Direct submission.