ISGNB1-1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EF628291 | ND | Uncultured bacterium | Uncultured bacterium plasmid pGNB1 |
DNA section
IS Length : 1047 bp
Ends
IR Length : 15/18
IRL : GGCTCTGTTGCACAAACCCTGCCCCCCGAACTGTTAGCCTCGGGACATGA
IRR : GGCTTTGTTGCACAAGTCGAAAAAAGTCGATATGACCCCTACCCCAGACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGGACTACATCGCAGC | GTTCAACAGGCTGCTT | 0 |
DNA sequence
GGCTCTGTTGCACAAACCCTGCCCCCCGAACTGTTAGCCTCGGGACATGAGTGAATCCAAGAGCGCCAAGCCCCGCTACAAGACCACCAACTGGGCAGCG
TACAACGCAGCGCTCAAAGCCCGGGGCTCGCTGGCGATCTGGCTGGACAAAGACATGCAGTGGTACGCACCCGCCAGCGGCAAGCGGGGTAGGCAGCACG
TGTTCAGCGACGCCGCCATCCAGTTCTGCCTGAGCATCAAATGCCTTTTTGGTTTGGCCCTGCGCCAAAGCCTGGGACTGGTGCAAAGCCTGCTGCACCT
GGCAGACCTGGATTGGAGGGTGCCCGACTTCAGCACCGTGAGCCGACGCCAAAAGACACTGCAGGTGCAACTGCCCTACCGAGCCTCTACCAGCGCGCTG
AACCTGCTGGTGGACAGCACCGGCATCAAGTTCCTGGGCGAGGGGGAGTGGAAACGCAAGAAACACGGGGCAGAGTACCGGCGCCAGTGGCGCAAAGTGC
ACCTGGGTATTGATGCCAGCACGCTGGAGATACGGGCCATTGAAGTCACAGACAACAGCGTGGGCGACGCGCCCATGCTGCCTGGGCTGCTGGGGCAGAT
ACCACCGGGTGAACCGATCGCCAGTGTGAGTACCGACGGTGCATACGACACCAAGGCGTGCCATGCGGCGATCATGGAACGTGGGGCACAAGCGATCATC
CCGCCGCGCAAGAACGCCCAGGTGTGGAAGTCCCAAACGCCTGGGGCCATGGTGCGTAACGAAGCGGTGCTGGCGTGCAAGAGGCTGGGTTGGCGTATCT
GGAAGAAGTGGAGCGGCTACCACCGCAGGAGTCTGGTGGAGACCAAGATGCATTGCTTCAAGCGCCTGGGCGAGCGGGTGATGGCCCGCACATTCGAGCG
TCAGGTGACAGAGTTGCATGTGCGGGTGGCCTTGCTCAACCGATTCACGCAACTTGGGTGCCCCACAACGGTGGCGGTGCCTGCTGTGGCGTAGCTGCGT
CTGGGGTAGGGGTCATATCGACTTTTTTCGACTTGTGCAACAAAGCC
TACAACGCAGCGCTCAAAGCCCGGGGCTCGCTGGCGATCTGGCTGGACAAAGACATGCAGTGGTACGCACCCGCCAGCGGCAAGCGGGGTAGGCAGCACG
TGTTCAGCGACGCCGCCATCCAGTTCTGCCTGAGCATCAAATGCCTTTTTGGTTTGGCCCTGCGCCAAAGCCTGGGACTGGTGCAAAGCCTGCTGCACCT
GGCAGACCTGGATTGGAGGGTGCCCGACTTCAGCACCGTGAGCCGACGCCAAAAGACACTGCAGGTGCAACTGCCCTACCGAGCCTCTACCAGCGCGCTG
AACCTGCTGGTGGACAGCACCGGCATCAAGTTCCTGGGCGAGGGGGAGTGGAAACGCAAGAAACACGGGGCAGAGTACCGGCGCCAGTGGCGCAAAGTGC
ACCTGGGTATTGATGCCAGCACGCTGGAGATACGGGCCATTGAAGTCACAGACAACAGCGTGGGCGACGCGCCCATGCTGCCTGGGCTGCTGGGGCAGAT
ACCACCGGGTGAACCGATCGCCAGTGTGAGTACCGACGGTGCATACGACACCAAGGCGTGCCATGCGGCGATCATGGAACGTGGGGCACAAGCGATCATC
CCGCCGCGCAAGAACGCCCAGGTGTGGAAGTCCCAAACGCCTGGGGCCATGGTGCGTAACGAAGCGGTGCTGGCGTGCAAGAGGCTGGGTTGGCGTATCT
GGAAGAAGTGGAGCGGCTACCACCGCAGGAGTCTGGTGGAGACCAAGATGCATTGCTTCAAGCGCCTGGGCGAGCGGGTGATGGCCCGCACATTCGAGCG
TCAGGTGACAGAGTTGCATGTGCGGGTGGCCTTGCTCAACCGATTCACGCAACTTGGGTGCCCCACAACGGTGGCGGTGCCTGCTGTGGCGTAGCTGCGT
CTGGGGTAGGGGTCATATCGACTTTTTTCGACTTGTGCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 47 | 994 | + | No |
Chemistry : DDE
ORF sequence :
MSESKSAKPRYKTTNWAAYNAALKARGSLAIWLDKDMQWYAPASGKRGRQHVFSDAAIQFCLSIKCLFGLALRQSLGLVQSLLHLADLDWRVPDFSTVSR
RQKTLQVQLPYRASTSALNLLVDSTGIKFLGEGEWKRKKHGAEYRRQWRKVHLGIDASTLEIRAIEVTDNSVGDAPMLPGLLGQIPPGEPIASVSTDGAY
DTKACHAAIMERGAQAIIPPRKNAQVWKSQTPGAMVRNEAVLACKRLGWRIWKKWSGYHRRSLVETKMHCFKRLGERVMARTFERQVTELHVRVALLNRF
TQLGCPTTVAVPAVA
RQKTLQVQLPYRASTSALNLLVDSTGIKFLGEGEWKRKKHGAEYRRQWRKVHLGIDASTLEIRAIEVTDNSVGDAPMLPGLLGQIPPGEPIASVSTDGAY
DTKACHAAIMERGAQAIIPPRKNAQVWKSQTPGAMVRNEAVLACKRLGWRIWKKWSGYHRRSLVETKMHCFKRLGERVMARTFERQVTELHVRVALLNRF
TQLGCPTTVAVPAVA
Blast result :
Comments
ISGNB1-1 is 78% aa similar to ISAav2 .
References
1] Schluter,A., Krahn,I., Kollin,F., Bonemann,G., Stiens,M., Szczepanowski,R., Schneiker,S. and Puhler,A. (2007) Appl. Environ. Microbiol. 73 (20), 6345-6350