ISGNB1-1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EF628291 ND Uncultured bacterium
Uncultured bacterium plasmid pGNB1
DNA section
IS Length : 1047 bp

Ends


IR Length : 15/18

IRL : GGCTCTGTTGCACAAACCCTGCCCCCCGAACTGTTAGCCTCGGGACATGA
IRR : GGCTTTGTTGCACAAGTCGAAAAAAGTCGATATGACCCCTACCCCAGACG

Insertion site


Left flankDirect repeatRight flankDR Length
TGGGACTACATCGCAGCGTTCAACAGGCTGCTT0

DNA sequence

GGCTCTGTTGCACAAACCCTGCCCCCCGAACTGTTAGCCTCGGGACATGAGTGAATCCAAGAGCGCCAAGCCCCGCTACAAGACCACCAACTGGGCAGCG
TACAACGCAGCGCTCAAAGCCCGGGGCTCGCTGGCGATCTGGCTGGACAAAGACATGCAGTGGTACGCACCCGCCAGCGGCAAGCGGGGTAGGCAGCACG
TGTTCAGCGACGCCGCCATCCAGTTCTGCCTGAGCATCAAATGCCTTTTTGGTTTGGCCCTGCGCCAAAGCCTGGGACTGGTGCAAAGCCTGCTGCACCT
GGCAGACCTGGATTGGAGGGTGCCCGACTTCAGCACCGTGAGCCGACGCCAAAAGACACTGCAGGTGCAACTGCCCTACCGAGCCTCTACCAGCGCGCTG
AACCTGCTGGTGGACAGCACCGGCATCAAGTTCCTGGGCGAGGGGGAGTGGAAACGCAAGAAACACGGGGCAGAGTACCGGCGCCAGTGGCGCAAAGTGC
ACCTGGGTATTGATGCCAGCACGCTGGAGATACGGGCCATTGAAGTCACAGACAACAGCGTGGGCGACGCGCCCATGCTGCCTGGGCTGCTGGGGCAGAT
ACCACCGGGTGAACCGATCGCCAGTGTGAGTACCGACGGTGCATACGACACCAAGGCGTGCCATGCGGCGATCATGGAACGTGGGGCACAAGCGATCATC
CCGCCGCGCAAGAACGCCCAGGTGTGGAAGTCCCAAACGCCTGGGGCCATGGTGCGTAACGAAGCGGTGCTGGCGTGCAAGAGGCTGGGTTGGCGTATCT
GGAAGAAGTGGAGCGGCTACCACCGCAGGAGTCTGGTGGAGACCAAGATGCATTGCTTCAAGCGCCTGGGCGAGCGGGTGATGGCCCGCACATTCGAGCG
TCAGGTGACAGAGTTGCATGTGCGGGTGGCCTTGCTCAACCGATTCACGCAACTTGGGTGCCCCACAACGGTGGCGGTGCCTGCTGTGGCGTAGCTGCGT
CTGGGGTAGGGGTCATATCGACTTTTTTCGACTTGTGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa47994+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSESKSAKPRYKTTNWAAYNAALKARGSLAIWLDKDMQWYAPASGKRGRQHVFSDAAIQFCLSIKCLFGLALRQSLGLVQSLLHLADLDWRVPDFSTVSR
RQKTLQVQLPYRASTSALNLLVDSTGIKFLGEGEWKRKKHGAEYRRQWRKVHLGIDASTLEIRAIEVTDNSVGDAPMLPGLLGQIPPGEPIASVSTDGAY
DTKACHAAIMERGAQAIIPPRKNAQVWKSQTPGAMVRNEAVLACKRLGWRIWKKWSGYHRRSLVETKMHCFKRLGERVMARTFERQVTELHVRVALLNRF
TQLGCPTTVAVPAVA

 

Blast result :
Comments
ISGNB1-1 is 78% aa similar to ISAav2 .
References
1] Schluter,A., Krahn,I., Kollin,F., Bonemann,G., Stiens,M., Szczepanowski,R., Schneiker,S. and Puhler,A. (2007) Appl. Environ. Microbiol. 73 (20), 6345-6350