ISHar5
- Family IS30
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009138 | ND | Herminiimonas arsenicoxydans | Herminiimonas arsenicoxydans |
DNA section
IS Length : 1253 bp
Ends
IR Length : 32/41
IRL : GTCTGTTATCGACGGCGGTTTCAACCGGTGAATGCAACACACTAAAGGCT
IRR : GTCCACTTTGGGTGGCGGTTTCAACCGGTGGATGCAACAGATTGATAAAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCTGGATTTGTATGAAT | GTTGAAGAATAAATATT | 0 |
DNA sequence
GTCTGTTATCGACGGCGGTTTCAACCGGTGAATGCAACACACTAAAGGCTATGCAGATAGCGGGAGTGTGTCATGGTTCGCCGAACAAGGATCATCTATA
CCGATAGCCAAAAGGCTTTGATGTGGGATCGCTGGAAGAAGGGAGAATCTCTCCAGCAGATTGCCCAGCTCTTCGATCGAAACCATTCCTCTGTCCAGCG
CATTCTGGCCAAGAGCGGTGGGATTCGACCACCGCCACGCATTCGATCCAGTACGGCATTGACACTGGCCGAGCGTGAAGAAATCTCCCGTTCGATTGTC
GCTGGTGACTCGATGCGCACCATCGCCAAGAACCTGGAACGGGCAACATCGACAATCAGTCGGGAGATCAAACGCAACGGCGGCATTGAAGCCTATCGTG
CTGCAGAGGCAGATGCAGCCACCTGGAACCGCGCGCATCGGCCTAAACCCTGTAAGCTTTTACAGAACCGGCAGCTAGCCAGCGCCGTTGCGACCAAACT
TCGCCAACGATGGTCACCACAACAAGTGGCCGGATGGCTCAAATACACTCATCCAGGCAATGAGGAATTGCATGTGTCTCACGAAACTATCTACAAGACC
TTGTTCATCCAGACACGCGGTGCCCTGAAGAAAGAGCTGACCGAGCATCTGAGGCGCACACGTGTCATGCGTCGTTCACGTCATCACACGCAGAAGACAG
ACAATCACGGCCAGATCATTGATGCTGTTTCGATCAGCGAAAGACCGGCTACGGTAGAGGATCGTGCGGTCCCAGGCCATTGGGAAGGTGATTTATTATT
TGGAAGTGGCAACAGCCACATCGCGACATTGGTGGAGCGCCATACGCGCTATGTGATGTTGGTAAAAATCGCTCGCAAAGATACGCAGACGGTGATTGAT
GCGCTGATCAAGCATGCGGGCAAGCTACCGCAGGAATTATATAAATCGCTGACATGGGATCGAGGCAAAGAACTAGCTGACCACAAGCGCTTCACACTGG
CTACAGATATCCAGGTGTATTTCTGCGATCCACGCAGTCCCTGGCAGCGCGGCTCAAACGAAAATACCAATGGCCTGCTGCGTCAATACTTCCCAAAAGG
AATGGATATCTCGGGTTACTCGCAGGCTCAATTGAATGCTGTTGCCAGACAACTCAATGAACGACCGAGAAAAACCTTAAACTACGAAACACCGGCTCAA
CGGTTTTATCAATCTGTTGCATCCACCGGTTGAAACCGCCACCCAAAGTGGAC
CCGATAGCCAAAAGGCTTTGATGTGGGATCGCTGGAAGAAGGGAGAATCTCTCCAGCAGATTGCCCAGCTCTTCGATCGAAACCATTCCTCTGTCCAGCG
CATTCTGGCCAAGAGCGGTGGGATTCGACCACCGCCACGCATTCGATCCAGTACGGCATTGACACTGGCCGAGCGTGAAGAAATCTCCCGTTCGATTGTC
GCTGGTGACTCGATGCGCACCATCGCCAAGAACCTGGAACGGGCAACATCGACAATCAGTCGGGAGATCAAACGCAACGGCGGCATTGAAGCCTATCGTG
CTGCAGAGGCAGATGCAGCCACCTGGAACCGCGCGCATCGGCCTAAACCCTGTAAGCTTTTACAGAACCGGCAGCTAGCCAGCGCCGTTGCGACCAAACT
TCGCCAACGATGGTCACCACAACAAGTGGCCGGATGGCTCAAATACACTCATCCAGGCAATGAGGAATTGCATGTGTCTCACGAAACTATCTACAAGACC
TTGTTCATCCAGACACGCGGTGCCCTGAAGAAAGAGCTGACCGAGCATCTGAGGCGCACACGTGTCATGCGTCGTTCACGTCATCACACGCAGAAGACAG
ACAATCACGGCCAGATCATTGATGCTGTTTCGATCAGCGAAAGACCGGCTACGGTAGAGGATCGTGCGGTCCCAGGCCATTGGGAAGGTGATTTATTATT
TGGAAGTGGCAACAGCCACATCGCGACATTGGTGGAGCGCCATACGCGCTATGTGATGTTGGTAAAAATCGCTCGCAAAGATACGCAGACGGTGATTGAT
GCGCTGATCAAGCATGCGGGCAAGCTACCGCAGGAATTATATAAATCGCTGACATGGGATCGAGGCAAAGAACTAGCTGACCACAAGCGCTTCACACTGG
CTACAGATATCCAGGTGTATTTCTGCGATCCACGCAGTCCCTGGCAGCGCGGCTCAAACGAAAATACCAATGGCCTGCTGCGTCAATACTTCCCAAAAGG
AATGGATATCTCGGGTTACTCGCAGGCTCAATTGAATGCTGTTGCCAGACAACTCAATGAACGACCGAGAAAAACCTTAAACTACGAAACACCGGCTCAA
CGGTTTTATCAATCTGTTGCATCCACCGGTTGAAACCGCCACCCAAAGTGGAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1161 bp | 386 aa | 73 | 1233 | + | No |
Chemistry : DDE
ORF sequence :
MVRRTRIIYTDSQKALMWDRWKKGESLQQIAQLFDRNHSSVQRILAKSGGIRPPPRIRSSTALTLAEREEISRSIVAGDSMRTIAKNLERATSTISREIK
RNGGIEAYRAAEADAATWNRAHRPKPCKLLQNRQLASAVATKLRQRWSPQQVAGWLKYTHPGNEELHVSHETIYKTLFIQTRGALKKELTEHLRRTRVMR
RSRHHTQKTDNHGQIIDAVSISERPATVEDRAVPGHWEGDLLFGSGNSHIATLVERHTRYVMLVKIARKDTQTVIDALIKHAGKLPQELYKSLTWDRGKE
LADHKRFTLATDIQVYFCDPRSPWQRGSNENTNGLLRQYFPKGMDISGYSQAQLNAVARQLNERPRKTLNYETPAQRFYQSVASTG
RNGGIEAYRAAEADAATWNRAHRPKPCKLLQNRQLASAVATKLRQRWSPQQVAGWLKYTHPGNEELHVSHETIYKTLFIQTRGALKKELTEHLRRTRVMR
RSRHHTQKTDNHGQIIDAVSISERPATVEDRAVPGHWEGDLLFGSGNSHIATLVERHTRYVMLVKIARKDTQTVIDALIKHAGKLPQELYKSLTWDRGKE
LADHKRFTLATDIQVYFCDPRSPWQRGSNENTNGLLRQYFPKGMDISGYSQAQLNAVARQLNERPRKTLNYETPAQRFYQSVASTG
Blast result :
Comments
ISHar5 is 93% aa similar to ISHar4.
References
1] Muller,D., Medigue,C., Koechler,S., Barbe,V., Barakat,M., Talla,E., Bonnefoy,V., Krin,E., Arsene-Ploetze,F., Carapito,C., Chandler,M., Cournoyer,B., Cruveiller,S., Dossat,C., Duval,S., Heymann,M., Leize,E., Lieutaud,A., Lievremont,D., Makita,Y., Mangenot,S., Nitschke,W., Ortet,P., Perdrial,N., Schoepp,B., Siguier,P., Simeonova,D.D., Rouy,Z., Segurens,B., Turlin,E., Vallenet,D., Van Dorsselaer,A., Weiss,S., Weissenbach,J., Lett,M.C., Danchin,A. and Bertin,P.N. (2007) PLoS Genet. 3 (4), E53.