ISOgr3

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAOT01000006 ND Oceanicola granulosus
Oceanicola granulosus HTCC2516
DNA section
IS Length : 1052 bp

Ends


IR Length : 16

IRL : GGCTCTGTTGCGCAAAGCCCGGGTGAGGGATTCATCTCGTGAATCCCGCG
IRR : GGCTTTGTTGCGCAAAGGACGTGAAGCGCGGACCTCCCCTTTCCCCAGAC

Insertion site


Left flankDirect repeatRight flankDR Length
CCAGAAGATAGCGCCCATGGGCGGGATG0

DNA sequence

GGCTCTGTTGCGCAAAGCCCGGGTGAGGGATTCATCTCGTGAATCCCGCGCGTTAGCCGGTCTGCATGAGCAGACCCATCCCGCCGAGCTACAAGACCAA
GAACTGGCCGGCCTACAACGAAGCGCTGAAGCAGCGTGGCTCCCTGACGATCTGGTTCGATCCGGACATGGCCTGGGTGCCGCCGCCGACCGGCAAGCGA
GGCCGTCAGCCGCAATATAGCGATGCTGCGATACAGACATGCCTGACGATGAAGGTCCTCTTCGGCATGGCGCTCCGGCAGACGACCGGTTTCGTTGAAA
GCCTCCTGCGCCTGGTTGGCCTCGACTGGGCGGTGCAGGATTTCAGCACGTTGAGCCGGCGCCAGAAGGCCTTGGCCGTGACCATTCCCTACCGCAACTC
GCAGGGGCCGCTGAACCTGCTGATCGACAGCACCGGCATCAAGGCCGAAGGTGAAGGCGAGTGGCACGCCCGCAAGCACGGTGGCGCGAAACGCCGCCTA
TGGCGCAAGATCCACATCGGCGTCGACGAGCAGACGCTGGAGATCCGAGCCCTCGAGATCACCGGGAGCAACGTCGGTGACGCGCCCATGCTGCCCGAAC
TGCTCAGCCAGATCCCGCCTGATGTGGAAATCGGCTCGGTCACCGCGGACGGTGCCTACGACACGCGCAAGTGCCACGACGCCGTCGCCGACGGAGGCGC
CCATGCGATCATACCGCCGCGCAGGAACGCCAAACCGTGGAAGCCTTCGACCGCGGGCGCCATCGCCCGGAACGAGGCCCTCCGAGCATCAAAATACCTC
GGCCGCGCCATCTGGCGAAAATGGAGCGGGTACCACCGCCGAAGCCGCGCCGAGACGAAGATGCACTGCGTGAAGCTCTTGGGGCAGAGCCTCATGGGAC
GCGACTTCGATCGGCAGGTCGCCGAACCTCAGATCCGCGCCGCCGTCCTGAACGGCTACACCGCGCTCGGCATACCTGTCACAGAGCCCGGGGCATAAGT
GCGTCTGGGGAAAGGGGAGGTCCGCGCTTCACGTCCTTTGCGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa66998+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRPIPPSYKTKNWPAYNEALKQRGSLTIWFDPDMAWVPPPTGKRGRQPQYSDAAIQTCLTMKVLFGMALRQTTGFVESLLRLVGLDWAVQDFSTLSRRQ
KALAVTIPYRNSQGPLNLLIDSTGIKAEGEGEWHARKHGGAKRRLWRKIHIGVDEQTLEIRALEITGSNVGDAPMLPELLSQIPPDVEIGSVTADGAYDT
RKCHDAVADGGAHAIIPPRRNAKPWKPSTAGAIARNEALRASKYLGRAIWRKWSGYHRRSRAETKMHCVKLLGQSLMGRDFDRQVAEPQIRAAVLNGYTA
LGIPVTEPGA

 

Blast result :
Comments
ISOgr3 is 87% aa similar to ISSpo9.
References
1] Giovannoni,S.J., Cho,J.-C., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.