ISfinder Mirror Site

ISRpa7

Family ISAs1
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_008435	ND	Rhodopseudomonas palustris	Rhodopseudomonas palustris BisA53

DNA section

IS Length : 1196 bp

Ends

IR Length : 14/17

IRL : CAGGGGAATCGCATATGGATTTTGGCCGGGTATTGCTTGGTTTCTCGAAT
IRR : GAGGGCTATCGCATATGACTGATGATGCTCATCAGGAAGACATCGTCCCA

Insertion site

Left flank	Direct repeat	Right flank	DR Length
ACCCCCGACCCCTC	CCCACAAGGG	GGAGGGGAGA	10

DNA sequence

CAGGGGAATCGCATATGGATTTTGGCCGGGTATTGCTTGGTTTCTCGAATTGGATTCTGAAGGCCTCTTCTGATTGTCGGGAGACATTGGATGAAGGCTT
TCGAGAGGGTTTTCAGTCGGTTGCCGGACCCGCGGGCGGACAACGCGCGGCACGATTTGTGCGAGGTTTTGTTCATCGCGCTGGCGGCAACGCTGTGCGG
CGCGGAGAGTTGCGCGGAAATGGCCGAGTTCGGCCAGAGCAAGGAAGGGTTTTTGCGGCTGCTGCTGCGTCTGGAGCACGGCATCCCGAGTCACGACACA
TTCAGCCGGGTATTCCGCATACTGGAGCCGGTGGCCTTCGAGAGCGCGTTCCGGCGTTTCATCGCGGCTTTTGCCAAGGCCAACAAGCTGAAGCTCACCG
GCGTGGTGGCGATCGACGGCAAGGCGTTGCGCGGAGCATTTGCCCGCGGCCGGCAGAGTACACCGTTGCATATGGTCAACGTCTGGGCGGTCGAAGCACG
GATCTGCCTGTCGCAGCGCCAAGCCCCCGGACGCAACGAGAGCGCCGGCGCCCTGCAGGCGTTGGCCTTGCTCGACCTCGACGGCTGCATCGTGACCGCC
GATGCGCTGCACTGTCATCGCGGCTTTGCGGCCACGGTGCGCGCGCGTGGCGGCGATTACGTGCTGGCGCTGAAGGCCAACCAGAGCAAGCTGTTCGCGG
CGGCCCAGCGCTGCTTCAAGCGTGGCGGCGAGCGCAGCGTTGCCGAACGGATCGAGCCTACCAGCCACGATCGCCGCGAAACACGCAGCGCCACCGTGCG
CCGGGTTGCCGGCTTCGCCGACGACGAATTCCCGGGCATCAAGGCGCTGGGGCGCATCACCTCGCGTCGCCGCCTTCCGGGCAAGGCCGCCGAACCACCG
TTGGTGCGTTACTTCCTGCTCTCGAAGCACGTCTCCGCGAAGCGGCTGCTGGCCATCGTGCGCGCGCATTGGAGCATCGAGAACCAACTGCACTGGGTGC
TCGACGTCGTCTTGAAAGAGGACCGCAGCAGGACCCGAAAGGACCATGCTCCCGAGAACCTCGCCACCTTGCGACGGCTCGCCCTCAACATTCTGCGTGC
CCATCCCGACGACAAGTCGATGCGCCGGAAAATCAAACGTGCCGGGTGGGACGATGTCTTCCTGATGAGCATCATCAGTCATATGCGATAGCCCTC

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1101 bp	366 aa	91	1191	+	No

ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MKAFERVFSRLPDPRADNARHDLCEVLFIALAATLCGAESCAEMAEFGQSKEGFLRLLLRLEHGIPSHDTFSRVFRILEPVAFESAFRRFIAAFAKANKL
KLTGVVAIDGKALRGAFARGRQSTPLHMVNVWAVEARICLSQRQAPGRNESAGALQALALLDLDGCIVTADALHCHRGFAATVRARGGDYVLALKANQSK
LFAAAQRCFKRGGERSVAERIEPTSHDRRETRSATVRRVAGFADDEFPGIKALGRITSRRRLPGKAAEPPLVRYFLLSKHVSAKRLLAIVRAHWSIENQL
HWVLDVVLKEDRSRTRKDHAPENLATLRRLALNILRAHPDDKSMRRKIKRAGWDDVFLMSIISHMR

Blast result :

Comments

ISRpa7 is 66% aa similar to ISRpa5.

References

1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Schmutz,J., Larimer,F., Land,M., Hauser,L., Pelletier,D.A., Kyrpides,N., Anderson,I., Oda,Y., Harwood,C.S. and Richardson,P. (2006) Direct submission GenBank.