ISSba1
- Family ISAs1
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009997 | ND | Shewanella baltica | Shewanella baltica OS223 Shewanella baltica OS195 Shewanella baltica OS185 |
DNA section
IS Length : 1218 bp
Ends
IR Length : 21/24
IRL : CAGGGCGGGATCATACTTTGTTAACAGTAGGGAACTTCTTCCTATCTGCA
IRR : CAGGGCGGGATTAAGCTTTGTTAAATCTCTTAACCAAAGAAAATCTCGCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGGTCTGGTGC | ACTGTAGTGG | TAGGTTACTTT | 10 |
DNA sequence
CAGGGCGGGATCATACTTTGTTAACAGTAGGGAACTTCTTCCTATCTGCATGATCTGATCGGGCATGTTATTCTACTGAGCCTAATCCATGTCCTTATTT
GAACACTTGAAACTCATCGAAGACCCTCGCTCTCACATCAACCTAGATCATGATTTAGTTGATATTATTTTTCTTGTTTTAGCCGCAATTGCTTCAGGTT
GTGATGGCTGGCAAGCTATTGAAGAATTCGGCCAAGAGAATCTATCTTGGCTGCGTCAACATCGAAATTTTGATAAAGGGATCCCAACTCGGCATTCCAT
TGCTCGGATCATTAAAGTGATCGATACCGAAATACTGGTTATGACACTCTTTAGTTGGGCAAATAGTTTAAGAGAAACCTCATCCAAGCCATTAATCGCT
ATTGACGGCAAAACCTTGCGGGGTGCTGTTAATCAACATGGTACTAAAAATGCGCTACACCTCGTTTCGGCCTTTGATACCGAACAAGGAATTGTGCTGT
ATCAGCAAGATACACAGACCAAAGGTAACGAAATCGCAACGGTTCAAGCGCTGTTGCACATGTTAGACATTAAAGATGCTGTTGTAACGTTTGATGCACT
TCACTGCCAGCGGGAAACGCTTCAACAAATCATCAAAGCTAAAGGCGACTATGTTGTTCAGGTAAAAGGCAACCAACCGCTACTGAGGCAGGCCATTGAG
ATGCAATTTCAACCTCACTGGGATAACGACGGCGTCGACATATTAAGTATCGAAGAGGATGACAAGGGGCATGGCCGTAAGGAGCGTCGCACAACGTTTC
AAATTCCTGCAAAGCTGCCACAGGCGCTCGCGAAAAAGTGGCCATCAGCCAAGTCACTCATAGCAGTTGAACGTCAACGAACATGTAAAGGCATTGCAAC
CATAAATACGGATTATTACTTAAGTTCCTTACCGTTAGACGTCGAACTTGCAGCCAAAGCGGTGCGTCAGCATTGGCACATCGAGAACCTGCAACACTGG
GTGCTTGACGTCACTTTTAGGGAAGACTGTTCAAGGATTGGTGACCGTGAAAACGCGAAGAAGATGGCGCTATTTCGTCGTATCGTGCTGAACCTTTTAG
AGCAGCATCCGCTAAAAGCCAGCAAACCAACCAAGATAAGAAAAGCTGCATGGAATGGCGATTTTAGGAGCGAGATTTTCTTTGGTTAAGAGATTTAACA
AAGCTTAATCCCGCCCTG
GAACACTTGAAACTCATCGAAGACCCTCGCTCTCACATCAACCTAGATCATGATTTAGTTGATATTATTTTTCTTGTTTTAGCCGCAATTGCTTCAGGTT
GTGATGGCTGGCAAGCTATTGAAGAATTCGGCCAAGAGAATCTATCTTGGCTGCGTCAACATCGAAATTTTGATAAAGGGATCCCAACTCGGCATTCCAT
TGCTCGGATCATTAAAGTGATCGATACCGAAATACTGGTTATGACACTCTTTAGTTGGGCAAATAGTTTAAGAGAAACCTCATCCAAGCCATTAATCGCT
ATTGACGGCAAAACCTTGCGGGGTGCTGTTAATCAACATGGTACTAAAAATGCGCTACACCTCGTTTCGGCCTTTGATACCGAACAAGGAATTGTGCTGT
ATCAGCAAGATACACAGACCAAAGGTAACGAAATCGCAACGGTTCAAGCGCTGTTGCACATGTTAGACATTAAAGATGCTGTTGTAACGTTTGATGCACT
TCACTGCCAGCGGGAAACGCTTCAACAAATCATCAAAGCTAAAGGCGACTATGTTGTTCAGGTAAAAGGCAACCAACCGCTACTGAGGCAGGCCATTGAG
ATGCAATTTCAACCTCACTGGGATAACGACGGCGTCGACATATTAAGTATCGAAGAGGATGACAAGGGGCATGGCCGTAAGGAGCGTCGCACAACGTTTC
AAATTCCTGCAAAGCTGCCACAGGCGCTCGCGAAAAAGTGGCCATCAGCCAAGTCACTCATAGCAGTTGAACGTCAACGAACATGTAAAGGCATTGCAAC
CATAAATACGGATTATTACTTAAGTTCCTTACCGTTAGACGTCGAACTTGCAGCCAAAGCGGTGCGTCAGCATTGGCACATCGAGAACCTGCAACACTGG
GTGCTTGACGTCACTTTTAGGGAAGACTGTTCAAGGATTGGTGACCGTGAAAACGCGAAGAAGATGGCGCTATTTCGTCGTATCGTGCTGAACCTTTTAG
AGCAGCATCCGCTAAAAGCCAGCAAACCAACCAAGATAAGAAAAGCTGCATGGAATGGCGATTTTAGGAGCGAGATTTTCTTTGGTTAAGAGATTTAACA
AAGCTTAATCCCGCCCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1101 bp | 366 aa | 89 | 1189 | + | No |
Chemistry : Unknow
ORF sequence :
MSLFEHLKLIEDPRSHINLDHDLVDIIFLVLAAIASGCDGWQAIEEFGQENLSWLRQHRNFDKGIPTRHSIARIIKVIDTEILVMTLFSWANSLRETSSK
PLIAIDGKTLRGAVNQHGTKNALHLVSAFDTEQGIVLYQQDTQTKGNEIATVQALLHMLDIKDAVVTFDALHCQRETLQQIIKAKGDYVVQVKGNQPLLR
QAIEMQFQPHWDNDGVDILSIEEDDKGHGRKERRTTFQIPAKLPQALAKKWPSAKSLIAVERQRTCKGIATINTDYYLSSLPLDVELAAKAVRQHWHIEN
LQHWVLDVTFREDCSRIGDRENAKKMALFRRIVLNLLEQHPLKASKPTKIRKAAWNGDFRSEIFFG
PLIAIDGKTLRGAVNQHGTKNALHLVSAFDTEQGIVLYQQDTQTKGNEIATVQALLHMLDIKDAVVTFDALHCQRETLQQIIKAKGDYVVQVKGNQPLLR
QAIEMQFQPHWDNDGVDILSIEEDDKGHGRKERRTTFQIPAKLPQALAKKWPSAKSLIAVERQRTCKGIATINTDYYLSSLPLDVELAAKAVRQHWHIEN
LQHWVLDVTFREDCSRIGDRENAKKMALFRRIVLNLLEQHPLKASKPTKIRKAAWNGDFRSEIFFG
Blast result :
Comments
ISSba1 is 67% aa similar to ISAs1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S. and Richardson,P. (2007) Direct submission GenBank.