ISAma3

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAOD01000015 ND Alteromonas macleodii
Alteromonas macleodii 'Deep ecotype'
DNA section
IS Length : 1205 bp

Ends


IR Length : 16/17

IRL : CAGGGCAAGATCATACTCTAACTTGCGTTAACTAGCGCATCTGTGATCAA
IRR : CAGGGCAAAATCATACTTGAATGAAATTTAAGCAAACAAGAGTTTTTCTC

Insertion site


Left flankDirect repeatRight flankDR Length
ACAATTTTGCTAGTATTCGCTCTCAAGTTGAATTCCGCAACAAAG10

DNA sequence

CAGGGCAAGATCATACTCTAACTTGCGTTAACTAGCGCATCTGTGATCAAATCTAGCTTTTTAGGCTAGCACAGATGTCATTTATTACCCATTTTGAGTC
ACTTGAAGATAAACGCTCTCATATCAATAAGAAGCATGACCTACTTGATGTGATTTTTCTCACCGTGGTGGCCATTCTTTCTGGTGCTGAAGGATGGAAA
GACATTAAGCAATTTGGGGACAGCAAACTGGATTGGTTGCGTAAGTTCAGGGCCTTTAAAGAGGGTGTACCCGTCGACGATACTATTGCCCGTATTATCA
GCTCGCTAGAGCCCAACGCCTTGCTAACGAGCTTCATTAGCTGGGTGAATGAAATCCGTGAAGACCAAGGGCAGCCCGTGATTGCGTTTGATGGTAAAAC
GCTTCGCCATTCATTCGATGGTGATAGGAAAACCGCCCTTCACAGCGTGTCGGCCTACGCGGTGGAACAAGGTTTAGTCCTCGCACAATGTAAATCGAAG
GGTAAGAAAAATGAAGTGTCGACGGTACTGGAATTGATTGAATTACTGGAGTTAAAAGGCAGTATTGTCACTGCCGATGCCATGCATTGCCTGAAGAAGG
TCGCTAAAGCCATTAATGCAAAAGGAGGCGACTATGTTCTGCAAGTCAAGAATAACCAAGGTAAACTTGCAACGGAAATAGCGGCTTACTTCCACAAGAC
ACGGCGTGATACCCCACAAGATATCAAAACAAACAGTTTAACCTTAACCAATGATGGTCATGGACGCATCGAGGAGCGTACCTACGTTCAGCTACCCATT
ACGCCTTGGTTGACGCAAAGCCAAGGCTGGACGAATATTAAGCCGGTCATTGAAGTCACCCGAAAACGCTACCTTAAAGATAAGGAAACGAGTGAGACCG
CTTATTACATCAGTTCCTTGGAGGTTAACTTACCTCAAATTGCAAAAGCCATTCGCAGCCATTGGTCGATAGAAAATGCATCACATTGGGTACTGGATAT
GACGTATCGAGAGGACGACTCCCGCATCAGACGCGGCGATGCGCCCGAAAATATGGCAACCTTCCGCCGCTTTGCAATGAATTTAGCACGCTTGAGTCCT
ATTAAAGACAGTATGAAAGGTAAGCTAAAGCAGGCGGCGTGGTCTGATGAAGTCAGAGAAAAACTCTTGTTTGCTTAAATTTCATTCAAGTATGATTTTG
CCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1104 bp367 aa751178+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSFITHFESLEDKRSHINKKHDLLDVIFLTVVAILSGAEGWKDIKQFGDSKLDWLRKFRAFKEGVPVDDTIARIISSLEPNALLTSFISWVNEIREDQGQ
PVIAFDGKTLRHSFDGDRKTALHSVSAYAVEQGLVLAQCKSKGKKNEVSTVLELIELLELKGSIVTADAMHCLKKVAKAINAKGGDYVLQVKNNQGKLAT
EIAAYFHKTRRDTPQDIKTNSLTLTNDGHGRIEERTYVQLPITPWLTQSQGWTNIKPVIEVTRKRYLKDKETSETAYYISSLEVNLPQIAKAIRSHWSIE
NASHWVLDMTYREDDSRIRRGDAPENMATFRRFAMNLARLSPIKDSMKGKLKQAAWSDEVREKLLFA

 

Blast result :
Comments
ISAma3 is 61% aa similar to ISAs1.
References
1]Rodriguez-Valera,F., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.