ISEc26
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_002655 | ND | Escherichia coli | Escherichia coli O157:H7 EDL933 |
DNA section
IS Length : 1305 bp
Ends
IR Length : 16/17
IRL : CAGGGCAAGATCATGAAAATCGTGATGTAAATCACGATTTTCATCCTGGC
IRR : CAGGGCAAGAGCATGAATTAAATCTGTGTTAAATTTTTCATTTTGTCAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGACATGAGAGCAAGGGA | CGGGG | GGATTATTAAATCTTCC | 5 |
DNA sequence
CAGGGCAAGATCATGAAAATCGTGATGTAAATCACGATTTTCATCCTGGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGA
TAAAAAGGACGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGATCCCTGATATACGACAACAAGGAAAGGTTAAACATAAATTATCTGATA
TTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGG
TGATTTTGATAATGGCATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATATTTATTGAATGGATGCAG
GAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGG
TGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTAAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACT
GGATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTA
AAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAA
GTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGCCTGAATTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGT
AGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCA
CATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAG
CCGAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGGGGTGAAGAGGAAAAGAAAGAAGGTTGCGTT
AAACACATGTTATATAGAAGAAGTGCTTGCATCCTGCTCAGAGCTTGGGTTTCGAACTGACAAAATGAAAAATTTAACACAGATTTAATTCATGCTCTTG
CCCTG
TAAAAAGGACGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGATCCCTGATATACGACAACAAGGAAAGGTTAAACATAAATTATCTGATA
TTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGG
TGATTTTGATAATGGCATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATATTTATTGAATGGATGCAG
GAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGG
TGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTAAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACT
GGATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTA
AAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAA
GTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGCCTGAATTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGT
AGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCA
CATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAG
CCGAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGGGGTGAAGAGGAAAAGAAAGAAGGTTGCGTT
AAACACATGTTATATAGAAGAAGTGCTTGCATCCTGCTCAGAGCTTGGGTTTCGAACTGACAAAATGAAAAATTTAACACAGATTTAATTCATGCTCTTG
CCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1173 bp | 390 aa | 116 | 1288 | + | No |
Chemistry : Unknow
ORF sequence :
MSIQSLLDYISVIPDIRQQGKVKHKLSDILFLTVCAVIAGADEWQEIEDFGHERLEWLKKYGDFDNGIPVDDTIARVVSNIDSLAFEKIFIEWMQECHEI
TDGEIIAIDGKTIRGSFDKGKRKGAIHMVSAFSNENGVVLGQVKTEAKSNEITAIPELLNLLDLKKNLITIDAMGCQKDIASKIKDKKADYLLAVKGNQG
KLHHAFEEKFPVNVFSNYKGDSFSTQEISHGRKETRLHIVSNVTPEFCDFEFEWKGLKKLCVALSFRQKKEDKSAEGVSIRYYISSKDMDAKEFAHAIRA
HWLIEHSLHWVLDVKMNEDASRIRRGNAAEIISGIKKMALNLLRDCKDIKGGVKRKRKKVALNTCYIEEVLASCSELGFRTDKMKNLTQI
TDGEIIAIDGKTIRGSFDKGKRKGAIHMVSAFSNENGVVLGQVKTEAKSNEITAIPELLNLLDLKKNLITIDAMGCQKDIASKIKDKKADYLLAVKGNQG
KLHHAFEEKFPVNVFSNYKGDSFSTQEISHGRKETRLHIVSNVTPEFCDFEFEWKGLKKLCVALSFRQKKEDKSAEGVSIRYYISSKDMDAKEFAHAIRA
HWLIEHSLHWVLDVKMNEDASRIRRGNAAEIISGIKKMALNLLRDCKDIKGGVKRKRKKVALNTCYIEEVLASCSELGFRTDKMKNLTQI
Blast result :
Comments
ISEc26 is 76% aa similar to ISEc1.
References
1] Perna,N.T., Plunkett,G. III, Burland,V., Mau,B., Glasner,J.D., Rose,D.J., Mayhew,G.F., Evans,P.S., Gregor,J., Kirkpatrick,H.A., Posfai,G., Hackett,J., Klink,S., Boutin,A., Shao,Y., Miller,L., Grotbeck,E.J., Davis,N.W., Lim,A., Dimalanta,E., Potamousis,K., Apodaca,J., Anantharaman,T.S., Lin,J., Yen,G., Schwartz,D.C., Welch,R.A. and Blattner,F.R.(2001) Nature 409 (6819), 529-533