ISEc26

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002655 ND Escherichia coli
Escherichia coli O157:H7 EDL933
DNA section
IS Length : 1305 bp

Ends


IR Length : 16/17

IRL : CAGGGCAAGATCATGAAAATCGTGATGTAAATCACGATTTTCATCCTGGC
IRR : CAGGGCAAGAGCATGAATTAAATCTGTGTTAAATTTTTCATTTTGTCAGT

Insertion site


Left flankDirect repeatRight flankDR Length
AGACATGAGAGCAAGGGACGGGGGGATTATTAAATCTTCC5

DNA sequence

CAGGGCAAGATCATGAAAATCGTGATGTAAATCACGATTTTCATCCTGGCTTTAACGCCTACAGGTGATCAAAATTTAACCTTTGGAATAACTAAAAAGA
TAAAAAGGACGCCAGGTGAGTATTCAAAGTTTGCTTGATTATATTTCAGTGATCCCTGATATACGACAACAAGGAAAGGTTAAACATAAATTATCTGATA
TTTTGTTTCTCACCGTATGTGCAGTAATTGCAGGTGCCGATGAGTGGCAGGAAATTGAAGATTTTGGACATGAAAGACTTGAATGGCTAAAGAAATATGG
TGATTTTGATAATGGCATTCCGGTCGATGACACCATTGCACGCGTTGTGAGTAACATTGACAGTTTGGCCTTTGAAAAGATATTTATTGAATGGATGCAG
GAGTGCCATGAAATCACTGATGGTGAAATTATAGCAATAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGG
TGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTAAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACT
GGATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTA
AAAGGCAATCAGGGGAAATTACATCATGCATTCGAGGAAAAATTTCCTGTAAATGTGTTTTCTAATTATAAAGGCGATTCGTTTAGTACGCAGGAGATAA
GTCATGGAAGAAAAGAAACACGTTTGCATATTGTCAGTAACGTAACGCCTGAATTTTGTGATTTTGAATTCGAATGGAAGGGATTAAAAAAGCTTTGTGT
AGCATTGTCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCA
CATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAG
CCGAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGGGGTGAAGAGGAAAAGAAAGAAGGTTGCGTT
AAACACATGTTATATAGAAGAAGTGCTTGCATCCTGCTCAGAGCTTGGGTTTCGAACTGACAAAATGAAAAATTTAACACAGATTTAATTCATGCTCTTG
CCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1173 bp390 aa1161288+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSIQSLLDYISVIPDIRQQGKVKHKLSDILFLTVCAVIAGADEWQEIEDFGHERLEWLKKYGDFDNGIPVDDTIARVVSNIDSLAFEKIFIEWMQECHEI
TDGEIIAIDGKTIRGSFDKGKRKGAIHMVSAFSNENGVVLGQVKTEAKSNEITAIPELLNLLDLKKNLITIDAMGCQKDIASKIKDKKADYLLAVKGNQG
KLHHAFEEKFPVNVFSNYKGDSFSTQEISHGRKETRLHIVSNVTPEFCDFEFEWKGLKKLCVALSFRQKKEDKSAEGVSIRYYISSKDMDAKEFAHAIRA
HWLIEHSLHWVLDVKMNEDASRIRRGNAAEIISGIKKMALNLLRDCKDIKGGVKRKRKKVALNTCYIEEVLASCSELGFRTDKMKNLTQI

 

Blast result :
Comments
ISEc26 is 76% aa similar to ISEc1.
References
1] Perna,N.T., Plunkett,G. III, Burland,V., Mau,B., Glasner,J.D., Rose,D.J., Mayhew,G.F., Evans,P.S., Gregor,J., Kirkpatrick,H.A., Posfai,G., Hackett,J., Klink,S., Boutin,A., Shao,Y., Miller,L., Grotbeck,E.J., Davis,N.W., Lim,A., Dimalanta,E., Potamousis,K., Apodaca,J., Anantharaman,T.S., Lin,J., Yen,G., Schwartz,D.C., Welch,R.A. and Blattner,F.R.(2001) Nature 409 (6819), 529-533