ISPpr11
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006371 | ND | Photobacterium profundum | Photobacterium profundum SS9 |
DNA section
IS Length : 1238 bp
Ends
IR Length : 11/16
IRL : CAGGGTAAGATCGTGAACGTTTTTTAGTCAATTTAACGATCGATTTGACG
IRR : CAGGGCAACCGCATGAGTGCCTAGTTTTTCGCCATCTCGCTAAAACCTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATAGATTTTAAAAGGCCAAGTATAT | GGGTATAGGCAGTATTTAAAACGATAA | 0 |
DNA sequence
CAGGGTAAGATCGTGAACGTTTTTTAGTCAATTTAACGATCGATTTGACGATCATATTTAGCTGTGATCATATACTCCCTTTTTGGGGAGACCATCATGC
ATATTGACCACTTTAAAGAACATTTTCAGAGCATCACTGACCAGCGCCAAGGTGCTAAGGTGACTTATTGCCTTTTTGAAGTCTTGTTTGGCTCATTATG
TGCGGTGATTGCTGGAGCCAAGGGCTGGTTTGATATTCGTGAATACATTCTTGGTCGTCATGACTGGTTTGCTCACAACAATATGTTTTTGAACGATATC
CCTGTTGATGACACTATCGCACGGATCATATCTACCATTGAACCAAAGCAATTTCAAGAATGCTTCATTAACTGGATGTTTTCAGTCCATACACTGACCG
AAGGACAAGTGGTCGCTATTGATGGTAAAACACTTCGTGGCTCCTACAACCGTGAGGATAGAGCCAGTACCATCCATATGATCAGCGCCTATGCGTCATC
CAATAAATTAGTGTTGGGACAGTTAAAAACGGAACAAAAGAGCAATGAAATTACCGTAATCCCTGAGCTGATAAGGATGCTCGACATAAAGGGAGCATTG
GTAACCATTGACGCGATGGCTTGTCAAACCAAGATAGCCAAAGCCATTGTCGATAAAGACGCAGATTACTTGCTTGCAGTCAAAAGTAGTCAGGGAAAAC
TGCGTATAGCGGTAGAAAAGGCGTTTGCCGCTGAGTGTTCAAGTGTAGCCGATGACATCACTTTTGAGAAAGGACATGGTCGCATCGAGTCACGCCAGTG
TTATGTCTTTGGAAGCGACAAGCTTGAGGGTAACTTCTCTCGCTGGAAAGGCCTAAAAAGCATCGTGATGGTCGAAAAATTCCACTTTGTCAAAGGGAAG
AAATTAGATCTAGAATACCGCTACTACATCAGCTCGAAAGAACTTACCGCAGAGCAAGCCGCGAGCGCGGTTAGAGAGCACTGGGGTATTGAATCCATGC
ATTGGGTGCTCGATGTGAGTATGAATGAAGATGCGTGGCAAATATACAAAGATCATGGTGCAGAAAACCTAGCCTGTCTGCGTCATATGAGTCTGAATAT
GCTTCGAGCAGAGCCAACTAAACTCAGTATCGTCGGAAAGCAGAAATGCTGCATGATGAATACTTCAATGTTAGAGGCAGTGTTGAGCGCAGGTTTTAGC
GAGATGGCGAAAAACTAGGCACTCATGCGGTTGCCCTG
ATATTGACCACTTTAAAGAACATTTTCAGAGCATCACTGACCAGCGCCAAGGTGCTAAGGTGACTTATTGCCTTTTTGAAGTCTTGTTTGGCTCATTATG
TGCGGTGATTGCTGGAGCCAAGGGCTGGTTTGATATTCGTGAATACATTCTTGGTCGTCATGACTGGTTTGCTCACAACAATATGTTTTTGAACGATATC
CCTGTTGATGACACTATCGCACGGATCATATCTACCATTGAACCAAAGCAATTTCAAGAATGCTTCATTAACTGGATGTTTTCAGTCCATACACTGACCG
AAGGACAAGTGGTCGCTATTGATGGTAAAACACTTCGTGGCTCCTACAACCGTGAGGATAGAGCCAGTACCATCCATATGATCAGCGCCTATGCGTCATC
CAATAAATTAGTGTTGGGACAGTTAAAAACGGAACAAAAGAGCAATGAAATTACCGTAATCCCTGAGCTGATAAGGATGCTCGACATAAAGGGAGCATTG
GTAACCATTGACGCGATGGCTTGTCAAACCAAGATAGCCAAAGCCATTGTCGATAAAGACGCAGATTACTTGCTTGCAGTCAAAAGTAGTCAGGGAAAAC
TGCGTATAGCGGTAGAAAAGGCGTTTGCCGCTGAGTGTTCAAGTGTAGCCGATGACATCACTTTTGAGAAAGGACATGGTCGCATCGAGTCACGCCAGTG
TTATGTCTTTGGAAGCGACAAGCTTGAGGGTAACTTCTCTCGCTGGAAAGGCCTAAAAAGCATCGTGATGGTCGAAAAATTCCACTTTGTCAAAGGGAAG
AAATTAGATCTAGAATACCGCTACTACATCAGCTCGAAAGAACTTACCGCAGAGCAAGCCGCGAGCGCGGTTAGAGAGCACTGGGGTATTGAATCCATGC
ATTGGGTGCTCGATGTGAGTATGAATGAAGATGCGTGGCAAATATACAAAGATCATGGTGCAGAAAACCTAGCCTGTCTGCGTCATATGAGTCTGAATAT
GCTTCGAGCAGAGCCAACTAAACTCAGTATCGTCGGAAAGCAGAAATGCTGCATGATGAATACTTCAATGTTAGAGGCAGTGTTGAGCGCAGGTTTTAGC
GAGATGGCGAAAAACTAGGCACTCATGCGGTTGCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1059 bp | 352 aa | 160 | 1218 | + | No |
Chemistry : Unknow
ORF sequence :
MTYCLFEVLFGSLCAVIAGAKGWFDIREYILGRHDWFAHNNMFLNDIPVDDTIARIISTIEPKQFQECFINWMFSVHTLTEGQVVAIDGKTLRGSYNRED
RASTIHMISAYASSNKLVLGQLKTEQKSNEITVIPELIRMLDIKGALVTIDAMACQTKIAKAIVDKDADYLLAVKSSQGKLRIAVEKAFAAECSSVADDI
TFEKGHGRIESRQCYVFGSDKLEGNFSRWKGLKSIVMVEKFHFVKGKKLDLEYRYYISSKELTAEQAASAVREHWGIESMHWVLDVSMNEDAWQIYKDHG
AENLACLRHMSLNMLRAEPTKLSIVGKQKCCMMNTSMLEAVLSAGFSEMAKN
RASTIHMISAYASSNKLVLGQLKTEQKSNEITVIPELIRMLDIKGALVTIDAMACQTKIAKAIVDKDADYLLAVKSSQGKLRIAVEKAFAAECSSVADDI
TFEKGHGRIESRQCYVFGSDKLEGNFSRWKGLKSIVMVEKFHFVKGKKLDLEYRYYISSKELTAEQAASAVREHWGIESMHWVLDVSMNEDAWQIYKDHG
AENLACLRHMSLNMLRAEPTKLSIVGKQKCCMMNTSMLEAVLSAGFSEMAKN
Blast result :
Comments
ISPpr11 is 92% aa similar to ISVha1.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F.M., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Romualdi,C., Bartlett,D.H. and Valle,G.(2005) Science 307 (5714), 1459-1461