ISPpr11

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006371 ND Photobacterium profundum
Photobacterium profundum SS9
DNA section
IS Length : 1238 bp

Ends


IR Length : 11/16

IRL : CAGGGTAAGATCGTGAACGTTTTTTAGTCAATTTAACGATCGATTTGACG
IRR : CAGGGCAACCGCATGAGTGCCTAGTTTTTCGCCATCTCGCTAAAACCTGC

Insertion site


Left flankDirect repeatRight flankDR Length
ATAGATTTTAAAAGGCCAAGTATATGGGTATAGGCAGTATTTAAAACGATAA0

DNA sequence

CAGGGTAAGATCGTGAACGTTTTTTAGTCAATTTAACGATCGATTTGACGATCATATTTAGCTGTGATCATATACTCCCTTTTTGGGGAGACCATCATGC
ATATTGACCACTTTAAAGAACATTTTCAGAGCATCACTGACCAGCGCCAAGGTGCTAAGGTGACTTATTGCCTTTTTGAAGTCTTGTTTGGCTCATTATG
TGCGGTGATTGCTGGAGCCAAGGGCTGGTTTGATATTCGTGAATACATTCTTGGTCGTCATGACTGGTTTGCTCACAACAATATGTTTTTGAACGATATC
CCTGTTGATGACACTATCGCACGGATCATATCTACCATTGAACCAAAGCAATTTCAAGAATGCTTCATTAACTGGATGTTTTCAGTCCATACACTGACCG
AAGGACAAGTGGTCGCTATTGATGGTAAAACACTTCGTGGCTCCTACAACCGTGAGGATAGAGCCAGTACCATCCATATGATCAGCGCCTATGCGTCATC
CAATAAATTAGTGTTGGGACAGTTAAAAACGGAACAAAAGAGCAATGAAATTACCGTAATCCCTGAGCTGATAAGGATGCTCGACATAAAGGGAGCATTG
GTAACCATTGACGCGATGGCTTGTCAAACCAAGATAGCCAAAGCCATTGTCGATAAAGACGCAGATTACTTGCTTGCAGTCAAAAGTAGTCAGGGAAAAC
TGCGTATAGCGGTAGAAAAGGCGTTTGCCGCTGAGTGTTCAAGTGTAGCCGATGACATCACTTTTGAGAAAGGACATGGTCGCATCGAGTCACGCCAGTG
TTATGTCTTTGGAAGCGACAAGCTTGAGGGTAACTTCTCTCGCTGGAAAGGCCTAAAAAGCATCGTGATGGTCGAAAAATTCCACTTTGTCAAAGGGAAG
AAATTAGATCTAGAATACCGCTACTACATCAGCTCGAAAGAACTTACCGCAGAGCAAGCCGCGAGCGCGGTTAGAGAGCACTGGGGTATTGAATCCATGC
ATTGGGTGCTCGATGTGAGTATGAATGAAGATGCGTGGCAAATATACAAAGATCATGGTGCAGAAAACCTAGCCTGTCTGCGTCATATGAGTCTGAATAT
GCTTCGAGCAGAGCCAACTAAACTCAGTATCGTCGGAAAGCAGAAATGCTGCATGATGAATACTTCAATGTTAGAGGCAGTGTTGAGCGCAGGTTTTAGC
GAGATGGCGAAAAACTAGGCACTCATGCGGTTGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1059 bp352 aa1601218+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTYCLFEVLFGSLCAVIAGAKGWFDIREYILGRHDWFAHNNMFLNDIPVDDTIARIISTIEPKQFQECFINWMFSVHTLTEGQVVAIDGKTLRGSYNRED
RASTIHMISAYASSNKLVLGQLKTEQKSNEITVIPELIRMLDIKGALVTIDAMACQTKIAKAIVDKDADYLLAVKSSQGKLRIAVEKAFAAECSSVADDI
TFEKGHGRIESRQCYVFGSDKLEGNFSRWKGLKSIVMVEKFHFVKGKKLDLEYRYYISSKELTAEQAASAVREHWGIESMHWVLDVSMNEDAWQIYKDHG
AENLACLRHMSLNMLRAEPTKLSIVGKQKCCMMNTSMLEAVLSAGFSEMAKN

 

Blast result :
Comments
ISPpr11 is 92% aa similar to ISVha1.
References
1] Vezzi,A., Campanaro,S., D'Angelo,M., Simonato,F., Vitulo,N., Lauro,F.M., Cestaro,A., Malacrida,G., Simionati,B., Cannata,N., Romualdi,C., Bartlett,D.H. and Valle,G.(2005) Science 307 (5714), 1459-1461