ISfinder Mirror Site

ISPin4

Family ISAs1
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_008709	ND	Psychromonas ingrahamii	Psychromonas ingrahamii 37

DNA section

IS Length : 1364 bp

Ends

IR Length : 14/17

IRL : CAGGGCAAGATTACGAATACAGACTTTTATTTTGATTATTAATTGCTCTT
IRR : CAGGGGGAAATTACGAACGACTTAGTTCACATAATCAATCTAAATAGATT

Insertion site

Left flank	Direct repeat	Right flank	DR Length
ACGGCATTGA	TTGCAGTAAT	AGCAAAATATCTTAAA	10

DNA sequence

CAGGGCAAGATTACGAATACAGACTTTTATTTTGATTATTAATTGCTCTTTATTTTTACCTTTTATTTTTTAATGTTAGCTGTATCTATATATCTGAATT
TACAAAAGGATCACGTTGTAGATCAGTTTTGGTTGTGATCATAACCTTCTTTTTATCTTAAATAGAAACTAGATATGTCCCAAATAACCTTGATAAAGCA
GCTCTCAATCATCCGTGATACCCGACAACCGAGGAAAGTGCATCACAATTTAGTTGATGTTTTATTTTTGGCAATTACAGCCGTCATATCAGGCTGTGAG
GGTTGGGAAGAAATACAAGATTTCGGCAACGATAAGTTAGATTGGCTGAGAAAGTATTTACCCTTTTCAGGCGGAATACCTACGGACGACACAATTTCTC
GTGTTTTTCAGTTGATTGACCCAAAAGAATTTCAAAAGTGCTTTGCTACTTGGATGAAAAGTTGCTGTGAAATGAGTCATGGAGATGTCATTGCCATTGA
TGGAAAAACATTAAGAGGTTCATTTAATAAGAAAGATAAATCAGATACTATTCATATGGTTAGCGCTTTTGCAGCCGCTAATTCGGTTGTGTTAGGGCAA
GTTAAGACAAATGCTAAGTCTAATGAAATTACAGCGATTCCTAAGTTATTAGATTTATTGGATGTACGTGGATGCCTCGTAACTATTGATGCAATGGGAT
GCCAAACTAAAATAGCTAAAAAAATCGTAGATAAAGGTGGTGATTATCTTTTGCCTGTTAAAGATAACCAAGAACGATTACAAACAGCATTAGACGGTAT
ATTTTCAATTCGCCGATTAGAGTTACCAGAAACAGAAGCCTATACGACTAAAGAAAAAGGTCATGGTCGAGAAGATAGCAGGATGTGTATGGTTGCAGAT
GCTAACGAAATTGGTGACTTAGTTTTTGAATGGCCAGGCTTAAAAACGCTTGGGTATGTTGTCTCGTTTAGAACTGAGAAAGATATGCAAACAACTATAG
CAGTTAAGTTTTATATCAGTTCAGCAAAACTAGATGCTAAGTCTCTATTAGAGGCATCAAGAGCGCATTGGACTGTGGAAAATAACTTGCATTGGCAACT
TGATATTTCTATGAATGAAGACTCATGTCGTATTCGCCAGCAGAATTCAACAGAAAATATAGCAACTGTGCGACATACAAGCTTGAACTTGTTAAAGAAT
GAAAAGTCTTTCGATGGTGGTATCAAGAGAAAGCATAAACAAGCAAATCGCAGTGATAGTTACCGAGAACTAGTTGTTTCAGGACTTTCGTTGTTATAAA
TGAAGGGTAATTTCAATCTATTTAGATTGATTATGTGAACTAAGTCGTTCGTAATTTCCCCCTG

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
1125 bp	374 aa	175	1299	+	No

ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MSQITLIKQLSIIRDTRQPRKVHHNLVDVLFLAITAVISGCEGWEEIQDFGNDKLDWLRKYLPFSGGIPTDDTISRVFQLIDPKEFQKCFATWMKSCCEM
SHGDVIAIDGKTLRGSFNKKDKSDTIHMVSAFAAANSVVLGQVKTNAKSNEITAIPKLLDLLDVRGCLVTIDAMGCQTKIAKKIVDKGGDYLLPVKDNQE
RLQTALDGIFSIRRLELPETEAYTTKEKGHGREDSRMCMVADANEIGDLVFEWPGLKTLGYVVSFRTEKDMQTTIAVKFYISSAKLDAKSLLEASRAHWT
VENNLHWQLDISMNEDSCRIRQQNSTENIATVRHTSLNLLKNEKSFDGGIKRKHKQANRSDSYRELVVSGLSFL

Blast result :

Comments

ISPin4 is 67% aa similar to ISEc1.

References

1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Staley,J. and Richardson,P. (2007) Direct submission GenBank.