ISAcma2

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009925 ND Acaryochloris marina
Acaryochloris marina MBIC11017 plasmid pREB6
Acaryochloris marina MBIC11017
DNA section
IS Length : 1263 bp

Ends


IR Length : 18

IRL : CAGGGCGACCGCACATAGAAGTTAACAAAGCATTCGAATTAGGAAGAGGT
IRR : CAGGGCGACCGCACATAGTTCTTCATGAAGCAGGTATTCCCTTGGCAGCA

Insertion site


Left flankDirect repeatRight flankDR Length
ATGGGTCTATCAAAAGACAGAGATCCATCATGTATGG10
AAGTCGCTTTATCCCCCCCTGGCTAAACTG10

DNA sequence

CAGGGCGACCGCACATAGAAGTTAACAAAGCATTCGAATTAGGAAGAGGTGGAGGATAATGCCTCAAAAGCAACGCTCAGCAAGCCATGACATCCTCTCC
CTTTGCCTCAATTATTGAACACTTCAGCGACTTAGACGACCCGAGAGCAGCCCACCGCATAGAGTATTCGCTAGAAGATATCATCTTCATCACCCTATGC
GCTGTCCTTTGTGGAGCAGATAATTGGGTGGAAGTGGCCAACTATGGTTGTTCCAAAGCCCAGTGGTTAAAGCAATGGATAGCATTGCCAAACGGTATTC
CCTCCCATGACACCTTCGAGTGGGTCTTTGCCAGATTGAAACCTCAACAATTGCAGCAGTGCTTTCTCAATTGGACTCAAGCCATCTATCATCTGAGCGC
AGGAGCACTGATTGCCATTGACGGTAAGACGCTGCGGGGCGCGATTGCAACCGGTGAGCAGCGCAGCTTGATTCACATGGTCAGTGCATGGGCCAGTCAC
AATCGTCTCGTTTTAGGTCAACGCACCGTTGAGGAGAAATCTAATGAGATTACGGCTATCCCTGAATTACTGAAAATCCTAGAGCTTGAAGGAGCTTTGG
TCAGTATTGACGCGATGGGCTGTCAAACCGCGATTGCCGAGACGATTATTGAGGGCCAAGGGGATTATGTGTTGGCCCTCAAAGGCAATCAAGGTGATTT
ATATAACGATGTGGTGCAACTGTTTGACCATGCTTGTCAGACTCAATTTCAGGGGATTGAGCATGATAGCTATCAAACCGTCGAGAAAGGGCATGGGCGA
ATTGAGCATCGCACCTATTGGACAATGGGGCAAACCGATTACTTACTGGGGGCTGAGCGTTGGGCTCAATTGAAGTCGATTGGGTGCGTTGAATCGTGTC
GTCGTCAGCCAGGACACCCAGGCACACTTCAGCGGCGCTATTACCTTTTGAGCATTGAGAGTGATGCACAACGGTTTGCCGATGCTGTGCGCTCTCATTG
GGGGATTGAAAACCAGTTGCACTGGATTTTGGATGTGGGATTTCGTGAAGATAAACTGCGTGCCTGTCAGGGATACAGTGCTCAAAACTTATCCGTCATT
CGTCATATTGCTGCTAATTTGTTGCAGCAAGAGTCAACGGCTAAATGTGGGGTTAAGGCAAAACGGCTCAAGGCAGGTTGGGATGATGACTACCTGGTCA
AGATCCTCAGCGCTGCTGCCAAGGGAATACCTGCTTCATGAAGAACTATGTGCGGTCGCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1155 bp384 aa871241+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MTSSPFASIIEHFSDLDDPRAAHRIEYSLEDIIFITLCAVLCGADNWVEVANYGCSKAQWLKQWIALPNGIPSHDTFEWVFARLKPQQLQQCFLNWTQAI
YHLSAGALIAIDGKTLRGAIATGEQRSLIHMVSAWASHNRLVLGQRTVEEKSNEITAIPELLKILELEGALVSIDAMGCQTAIAETIIEGQGDYVLALKG
NQGDLYNDVVQLFDHACQTQFQGIEHDSYQTVEKGHGRIEHRTYWTMGQTDYLLGAERWAQLKSIGCVESCRRQPGHPGTLQRRYYLLSIESDAQRFADA
VRSHWGIENQLHWILDVGFREDKLRACQGYSAQNLSVIRHIAANLLQQESTAKCGVKAKRLKAGWDDDYLVKILSAAAKGIPAS

 

Blast result :
Comments
ISAcma2 is 61% aa similar to ISSod22.
References
1] Touchman,J.W. (2007) Direct submission GenBank.