ISBaov2

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAXF02000039 ND Bacteroides ovatus
Bacteroides ovatus ATCC 8483
DNA section
IS Length : 1352 bp

Ends


IR Length : 18

IRL : CAGGGAAAACGCATTATACTCTTTCCTTAATCTTTTATACATTTATCTTA
IRR : CAGGGAAAACGCATTATAAATCATGTAAAATAAGTTCCCATAAGAATTCA

Insertion site


Left flankDirect repeatRight flankDR Length
TTTCCTAAACAAGCACTAAAGATACGACAAAGTAACGA10

DNA sequence

CAGGGAAAACGCATTATACTCTTTCCTTAATCTTTTATACATTTATCTTACACCAATATTGTCTTTTCATCTTATTAATAAGATATTTATCTTTCATTTA
CAATATTATTTGAGTACATTTACGTGATTATAAATCACAATTAAAATGAAGCAAGAAACTAAAAGAAAGATTGAGATCAGCAACCTACATGAATTTGCTG
ATTCATTAATATTGATAGATAACCGGATAGACCGTTGTAAAAAACATCAGGCCAGTACCATTGTTCTTATTGCAATTTCTGCTGTTATATGTGGCGCTGA
TACTTGGAATTCAATAGAAGACTTTGGTAAAAGTAAAGAATCTTTTTTTGCAGCCAAGCTTTCCAATTTTAATGGTATCCCTTCCCATGATACATTTAAT
CGCTTTTTCTCGGCATTAGATCCTTTAAAATTTGAAGAATCTTATAGGCAATGGGTCCAAAGCATTCTCAAATGTTATTCGGGGCATATAGCCATTGATG
GTAAAACCATACGAGGAGCCTATGAATCCGAACAGGACAAGCGTCATCGTAAACAAGGAGTGCTTCCTGATTCGAATACGGGAAAGTACAAATTGCATGT
CATCAGTGCATTTGCAACAGAACTGGGAATCTCCCTTGGACAGTTATGTACACAAGAAAAGGAAAATGAGATAGTTGTCATTCCTGAATTATTAGATATG
TTGTGTATAAAAGATTGTATTATTACAATTGACGCTTTAGGATGCCAGCGTACAATTGCAGAGAAAGTCATAAAGGGAGAAGGTGACTACATTTTTATAG
TGAAAGATAATCAACCGAAATTAAAGGAAATAGTACTGTCAGTAACAGAAAGTATTGTATCAAAAGGTACAACAGTACGATTTGACAAATATGAGACGCA
TGAAGAAGGACATGGCAGGAATGAGTCGAGAATCTGCTATTGCTGCAACGATCCTGGTTTTCTGGGAGCAGATATTAGAAAGAAGTGGAAAAATATACAG
TCTTTCGGATATATAGAGAATACCAGAAATACAAACAAAGGCACTACAGTGGAAAAAAGATGTTTTATATCTTCCTTGGAACCTGATGCGCAGAAGATAC
TTAAAAATAGTAGAGAACACTGGGAAATTGAGAATAATCTACATTGGCAGCTAGATGTCAATTTCCATGAAGATAATACCAGAAGAAGAAATATATCAGC
ATTAAACTTCTCCGTACTGGCGAAAATTGCATTGGCTACATTAAGAAACAACAAAAGAGAGATACCAATCAATAGAAAAAGATTAATAGCAGGGTGGGAT
AATGAATTCTTATGGGAACTTATTTTACATGATTTATAATGCGTTTTCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1194 bp397 aa1461339+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MKQETKRKIEISNLHEFADSLILIDNRIDRCKKHQASTIVLIAISAVICGADTWNSIEDFGKSKESFFAAKLSNFNGIPSHDTFNRFFSALDPLKFEESY
RQWVQSILKCYSGHIAIDGKTIRGAYESEQDKRHRKQGVLPDSNTGKYKLHVISAFATELGISLGQLCTQEKENEIVVIPELLDMLCIKDCIITIDALGC
QRTIAEKVIKGEGDYIFIVKDNQPKLKEIVLSVTESIVSKGTTVRFDKYETHEEGHGRNESRICYCCNDPGFLGADIRKKWKNIQSFGYIENTRNTNKGT
TVEKRCFISSLEPDAQKILKNSREHWEIENNLHWQLDVNFHEDNTRRRNISALNFSVLAKIALATLRNNKREIPINRKRLIAGWDNEFLWELILHDL

 

Blast result :
Comments
ISBaov2 is 53% aa similar to ISAzo3.
References
1] Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H., Johnson,M., Thiruvilangam,P., Bhonagiri,V., Nash,W.E., Mardis,E.R. and Wilson,R.K. (2007) Direct submission GenBank.