ISBaov2
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAXF02000039 | ND | Bacteroides ovatus | Bacteroides ovatus ATCC 8483 |
DNA section
IS Length : 1352 bp
Ends
IR Length : 18
IRL : CAGGGAAAACGCATTATACTCTTTCCTTAATCTTTTATACATTTATCTTA
IRR : CAGGGAAAACGCATTATAAATCATGTAAAATAAGTTCCCATAAGAATTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTTCCTAAACA | AGCACTAAAG | ATACGACAAAGTAACGA | 10 |
DNA sequence
CAGGGAAAACGCATTATACTCTTTCCTTAATCTTTTATACATTTATCTTACACCAATATTGTCTTTTCATCTTATTAATAAGATATTTATCTTTCATTTA
CAATATTATTTGAGTACATTTACGTGATTATAAATCACAATTAAAATGAAGCAAGAAACTAAAAGAAAGATTGAGATCAGCAACCTACATGAATTTGCTG
ATTCATTAATATTGATAGATAACCGGATAGACCGTTGTAAAAAACATCAGGCCAGTACCATTGTTCTTATTGCAATTTCTGCTGTTATATGTGGCGCTGA
TACTTGGAATTCAATAGAAGACTTTGGTAAAAGTAAAGAATCTTTTTTTGCAGCCAAGCTTTCCAATTTTAATGGTATCCCTTCCCATGATACATTTAAT
CGCTTTTTCTCGGCATTAGATCCTTTAAAATTTGAAGAATCTTATAGGCAATGGGTCCAAAGCATTCTCAAATGTTATTCGGGGCATATAGCCATTGATG
GTAAAACCATACGAGGAGCCTATGAATCCGAACAGGACAAGCGTCATCGTAAACAAGGAGTGCTTCCTGATTCGAATACGGGAAAGTACAAATTGCATGT
CATCAGTGCATTTGCAACAGAACTGGGAATCTCCCTTGGACAGTTATGTACACAAGAAAAGGAAAATGAGATAGTTGTCATTCCTGAATTATTAGATATG
TTGTGTATAAAAGATTGTATTATTACAATTGACGCTTTAGGATGCCAGCGTACAATTGCAGAGAAAGTCATAAAGGGAGAAGGTGACTACATTTTTATAG
TGAAAGATAATCAACCGAAATTAAAGGAAATAGTACTGTCAGTAACAGAAAGTATTGTATCAAAAGGTACAACAGTACGATTTGACAAATATGAGACGCA
TGAAGAAGGACATGGCAGGAATGAGTCGAGAATCTGCTATTGCTGCAACGATCCTGGTTTTCTGGGAGCAGATATTAGAAAGAAGTGGAAAAATATACAG
TCTTTCGGATATATAGAGAATACCAGAAATACAAACAAAGGCACTACAGTGGAAAAAAGATGTTTTATATCTTCCTTGGAACCTGATGCGCAGAAGATAC
TTAAAAATAGTAGAGAACACTGGGAAATTGAGAATAATCTACATTGGCAGCTAGATGTCAATTTCCATGAAGATAATACCAGAAGAAGAAATATATCAGC
ATTAAACTTCTCCGTACTGGCGAAAATTGCATTGGCTACATTAAGAAACAACAAAAGAGAGATACCAATCAATAGAAAAAGATTAATAGCAGGGTGGGAT
AATGAATTCTTATGGGAACTTATTTTACATGATTTATAATGCGTTTTCCCTG
CAATATTATTTGAGTACATTTACGTGATTATAAATCACAATTAAAATGAAGCAAGAAACTAAAAGAAAGATTGAGATCAGCAACCTACATGAATTTGCTG
ATTCATTAATATTGATAGATAACCGGATAGACCGTTGTAAAAAACATCAGGCCAGTACCATTGTTCTTATTGCAATTTCTGCTGTTATATGTGGCGCTGA
TACTTGGAATTCAATAGAAGACTTTGGTAAAAGTAAAGAATCTTTTTTTGCAGCCAAGCTTTCCAATTTTAATGGTATCCCTTCCCATGATACATTTAAT
CGCTTTTTCTCGGCATTAGATCCTTTAAAATTTGAAGAATCTTATAGGCAATGGGTCCAAAGCATTCTCAAATGTTATTCGGGGCATATAGCCATTGATG
GTAAAACCATACGAGGAGCCTATGAATCCGAACAGGACAAGCGTCATCGTAAACAAGGAGTGCTTCCTGATTCGAATACGGGAAAGTACAAATTGCATGT
CATCAGTGCATTTGCAACAGAACTGGGAATCTCCCTTGGACAGTTATGTACACAAGAAAAGGAAAATGAGATAGTTGTCATTCCTGAATTATTAGATATG
TTGTGTATAAAAGATTGTATTATTACAATTGACGCTTTAGGATGCCAGCGTACAATTGCAGAGAAAGTCATAAAGGGAGAAGGTGACTACATTTTTATAG
TGAAAGATAATCAACCGAAATTAAAGGAAATAGTACTGTCAGTAACAGAAAGTATTGTATCAAAAGGTACAACAGTACGATTTGACAAATATGAGACGCA
TGAAGAAGGACATGGCAGGAATGAGTCGAGAATCTGCTATTGCTGCAACGATCCTGGTTTTCTGGGAGCAGATATTAGAAAGAAGTGGAAAAATATACAG
TCTTTCGGATATATAGAGAATACCAGAAATACAAACAAAGGCACTACAGTGGAAAAAAGATGTTTTATATCTTCCTTGGAACCTGATGCGCAGAAGATAC
TTAAAAATAGTAGAGAACACTGGGAAATTGAGAATAATCTACATTGGCAGCTAGATGTCAATTTCCATGAAGATAATACCAGAAGAAGAAATATATCAGC
ATTAAACTTCTCCGTACTGGCGAAAATTGCATTGGCTACATTAAGAAACAACAAAAGAGAGATACCAATCAATAGAAAAAGATTAATAGCAGGGTGGGAT
AATGAATTCTTATGGGAACTTATTTTACATGATTTATAATGCGTTTTCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1194 bp | 397 aa | 146 | 1339 | + | No |
Chemistry : Unknow
ORF sequence :
MKQETKRKIEISNLHEFADSLILIDNRIDRCKKHQASTIVLIAISAVICGADTWNSIEDFGKSKESFFAAKLSNFNGIPSHDTFNRFFSALDPLKFEESY
RQWVQSILKCYSGHIAIDGKTIRGAYESEQDKRHRKQGVLPDSNTGKYKLHVISAFATELGISLGQLCTQEKENEIVVIPELLDMLCIKDCIITIDALGC
QRTIAEKVIKGEGDYIFIVKDNQPKLKEIVLSVTESIVSKGTTVRFDKYETHEEGHGRNESRICYCCNDPGFLGADIRKKWKNIQSFGYIENTRNTNKGT
TVEKRCFISSLEPDAQKILKNSREHWEIENNLHWQLDVNFHEDNTRRRNISALNFSVLAKIALATLRNNKREIPINRKRLIAGWDNEFLWELILHDL
RQWVQSILKCYSGHIAIDGKTIRGAYESEQDKRHRKQGVLPDSNTGKYKLHVISAFATELGISLGQLCTQEKENEIVVIPELLDMLCIKDCIITIDALGC
QRTIAEKVIKGEGDYIFIVKDNQPKLKEIVLSVTESIVSKGTTVRFDKYETHEEGHGRNESRICYCCNDPGFLGADIRKKWKNIQSFGYIENTRNTNKGT
TVEKRCFISSLEPDAQKILKNSREHWEIENNLHWQLDVNFHEDNTRRRNISALNFSVLAKIALATLRNNKREIPINRKRLIAGWDNEFLWELILHDL
Blast result :
Comments
ISBaov2 is 53% aa similar to ISAzo3.
References
1] Fulton,L., Clifton,S., Fulton,B., Xu,J., Minx,P., Pepin,K.H., Johnson,M., Thiruvilangam,P., Bhonagiri,V., Nash,W.E., Mardis,E.R. and Wilson,R.K. (2007) Direct submission GenBank.