ISSpu2

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009438 ND Shewanella putrefaciens
Shewanella putrefaciens CN32
DNA section
IS Length : 1152 bp

Ends


IR Length : 20/29

IRL : AATAACTGTTCGGAATAGTAGATCACTTTGAGGGAACTCAGCCCGAATTG
IRR : AATAACTGATCCTAATACCGCTACACTTTAGCCAGCCCGTGTTTTCCACC

Insertion site


Left flankDirect repeatRight flankDR Length
CTTTTTTCTAGGACAAGC2

DNA sequence

AATAACTGTTCGGAATAGTAGATCACTTTGAGGGAACTCAGCCCGAATTGTGCGATCTGATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCG
ATGCCGATCATAGCACCAATTCCCCGTGACGAACGACGCCTGATGCAGAAAGCTATCCATAAAACGCGTGATAAAAATTATGCCCGCAGACTGACCGCCA
TGCTGATGTTGCACCGGGGCGAGCGCGTCAGTCATGTGGCCAGAACACTCTGCTGTGCCCGCTCATCGATTGGTCGCTGGATTAACTGGTTCACTCTGTC
TGGTGCTGAAGGCCTGAAGTCATTACCGTCAGGACGTGGCAGGCGCTGGCCGTTCGAACATATTTGCGCATTGCTGCGTGAGCTTGTGAAGCATTCTCCC
GGCGATTTCGGTTATCAGCGTTCCCGCTGGAGTACCGAACTGCTGGCGATAAAAATCCGTGATGTCACCGGTTGTCCGCTACATGCCTCAACCATCCGGA
GATGGTTACCTGCTGCCGGGCTGGTATGGCGCAGAGCAGCGCCGACACTGCGTATCCGTGACCCACACAAAGAAGAAAAAATGGTCGCTATCCATGAAGC
ACTGGCGAAATGCAGTGCGGAAAATCCCGTGTTTTCCGAAGATGAAGTGGATATTCATCTCAACCCGAAAATCGGTGCTGACTGGCAGTTACGCGGGCAG
CAAAAACGTGTTGTCACACCGGGCCAGAATGAAAAGTACTATCTTGCCGGTGCGCTGCACAGCGGTACGGGAAAAGTCAGCTACGTAGGTGGAAACAGTA
AAGGTTCATCTTTATTTATCAGACTGTTAAAACATCTTAAGGCGACATACCGGCGGGCAAAAACGATTACGCTCATTGTCGATAACTACATTATCCACAA
AAGCCGTGAAACGTTGCGCTGGCTGAAAGCAAACCAGAAGTTCAGGGTCATTTATCAGCCGGTTTACTCGCCATGGGTCAATCATGTCGAACGGTTGTGG
CAGGCGCTTCATGAGACAATAACCCGAAATCACCAGTGCCGTTCAATGTGGCAACTGTTGAAAAAGGTTCATCACTTTATGGATACCGTCAGCCCATTCC
CCGGTGGAAAACACGGGCTGGCTAAAGTGTAGCGGTATTAGGATCAGTTATT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1032 bp343 aa1011132+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPIIAPIPRDERRLMQKAIHKTRDKNYARRLTAMLMLHRGERVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPSGRGRRWPFEHICALLRELVKHSP
GDFGYQRSRWSTELLAIKIRDVTGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHKEEKMVAIHEALAKCSAENPVFSEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWLKANQKFRVIYQPVYSPWVNHVERLW
QALHETITRNHQCRSMWQLLKKVHHFMDTVSPFPGGKHGLAKV

 

Blast result :
Comments
There is 1 copy of ISSpu2 on the chromosome of Shewanella putrefaciens CN32. The ISSpu2 tranposase has 88% identity to IS630.
References
1] Romine, M. F. (2008) Direct submission.