ISSpu2
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009438 | ND | Shewanella putrefaciens | Shewanella putrefaciens CN32 |
DNA section
IS Length : 1152 bp
Ends
IR Length : 20/29
IRL : AATAACTGTTCGGAATAGTAGATCACTTTGAGGGAACTCAGCCCGAATTG
IRR : AATAACTGATCCTAATACCGCTACACTTTAGCCAGCCCGTGTTTTCCACC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTTTTTC | TA | GGACAAGC | 2 |
DNA sequence
AATAACTGTTCGGAATAGTAGATCACTTTGAGGGAACTCAGCCCGAATTGTGCGATCTGATCAATCGCTGAATATCCCAAATCACCAACCGGACTGAGCG
ATGCCGATCATAGCACCAATTCCCCGTGACGAACGACGCCTGATGCAGAAAGCTATCCATAAAACGCGTGATAAAAATTATGCCCGCAGACTGACCGCCA
TGCTGATGTTGCACCGGGGCGAGCGCGTCAGTCATGTGGCCAGAACACTCTGCTGTGCCCGCTCATCGATTGGTCGCTGGATTAACTGGTTCACTCTGTC
TGGTGCTGAAGGCCTGAAGTCATTACCGTCAGGACGTGGCAGGCGCTGGCCGTTCGAACATATTTGCGCATTGCTGCGTGAGCTTGTGAAGCATTCTCCC
GGCGATTTCGGTTATCAGCGTTCCCGCTGGAGTACCGAACTGCTGGCGATAAAAATCCGTGATGTCACCGGTTGTCCGCTACATGCCTCAACCATCCGGA
GATGGTTACCTGCTGCCGGGCTGGTATGGCGCAGAGCAGCGCCGACACTGCGTATCCGTGACCCACACAAAGAAGAAAAAATGGTCGCTATCCATGAAGC
ACTGGCGAAATGCAGTGCGGAAAATCCCGTGTTTTCCGAAGATGAAGTGGATATTCATCTCAACCCGAAAATCGGTGCTGACTGGCAGTTACGCGGGCAG
CAAAAACGTGTTGTCACACCGGGCCAGAATGAAAAGTACTATCTTGCCGGTGCGCTGCACAGCGGTACGGGAAAAGTCAGCTACGTAGGTGGAAACAGTA
AAGGTTCATCTTTATTTATCAGACTGTTAAAACATCTTAAGGCGACATACCGGCGGGCAAAAACGATTACGCTCATTGTCGATAACTACATTATCCACAA
AAGCCGTGAAACGTTGCGCTGGCTGAAAGCAAACCAGAAGTTCAGGGTCATTTATCAGCCGGTTTACTCGCCATGGGTCAATCATGTCGAACGGTTGTGG
CAGGCGCTTCATGAGACAATAACCCGAAATCACCAGTGCCGTTCAATGTGGCAACTGTTGAAAAAGGTTCATCACTTTATGGATACCGTCAGCCCATTCC
CCGGTGGAAAACACGGGCTGGCTAAAGTGTAGCGGTATTAGGATCAGTTATT
ATGCCGATCATAGCACCAATTCCCCGTGACGAACGACGCCTGATGCAGAAAGCTATCCATAAAACGCGTGATAAAAATTATGCCCGCAGACTGACCGCCA
TGCTGATGTTGCACCGGGGCGAGCGCGTCAGTCATGTGGCCAGAACACTCTGCTGTGCCCGCTCATCGATTGGTCGCTGGATTAACTGGTTCACTCTGTC
TGGTGCTGAAGGCCTGAAGTCATTACCGTCAGGACGTGGCAGGCGCTGGCCGTTCGAACATATTTGCGCATTGCTGCGTGAGCTTGTGAAGCATTCTCCC
GGCGATTTCGGTTATCAGCGTTCCCGCTGGAGTACCGAACTGCTGGCGATAAAAATCCGTGATGTCACCGGTTGTCCGCTACATGCCTCAACCATCCGGA
GATGGTTACCTGCTGCCGGGCTGGTATGGCGCAGAGCAGCGCCGACACTGCGTATCCGTGACCCACACAAAGAAGAAAAAATGGTCGCTATCCATGAAGC
ACTGGCGAAATGCAGTGCGGAAAATCCCGTGTTTTCCGAAGATGAAGTGGATATTCATCTCAACCCGAAAATCGGTGCTGACTGGCAGTTACGCGGGCAG
CAAAAACGTGTTGTCACACCGGGCCAGAATGAAAAGTACTATCTTGCCGGTGCGCTGCACAGCGGTACGGGAAAAGTCAGCTACGTAGGTGGAAACAGTA
AAGGTTCATCTTTATTTATCAGACTGTTAAAACATCTTAAGGCGACATACCGGCGGGCAAAAACGATTACGCTCATTGTCGATAACTACATTATCCACAA
AAGCCGTGAAACGTTGCGCTGGCTGAAAGCAAACCAGAAGTTCAGGGTCATTTATCAGCCGGTTTACTCGCCATGGGTCAATCATGTCGAACGGTTGTGG
CAGGCGCTTCATGAGACAATAACCCGAAATCACCAGTGCCGTTCAATGTGGCAACTGTTGAAAAAGGTTCATCACTTTATGGATACCGTCAGCCCATTCC
CCGGTGGAAAACACGGGCTGGCTAAAGTGTAGCGGTATTAGGATCAGTTATT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1032 bp | 343 aa | 101 | 1132 | + | No |
Chemistry : DDE
ORF sequence :
MPIIAPIPRDERRLMQKAIHKTRDKNYARRLTAMLMLHRGERVSHVARTLCCARSSIGRWINWFTLSGAEGLKSLPSGRGRRWPFEHICALLRELVKHSP
GDFGYQRSRWSTELLAIKIRDVTGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHKEEKMVAIHEALAKCSAENPVFSEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWLKANQKFRVIYQPVYSPWVNHVERLW
QALHETITRNHQCRSMWQLLKKVHHFMDTVSPFPGGKHGLAKV
GDFGYQRSRWSTELLAIKIRDVTGCPLHASTIRRWLPAAGLVWRRAAPTLRIRDPHKEEKMVAIHEALAKCSAENPVFSEDEVDIHLNPKIGADWQLRGQ
QKRVVTPGQNEKYYLAGALHSGTGKVSYVGGNSKGSSLFIRLLKHLKATYRRAKTITLIVDNYIIHKSRETLRWLKANQKFRVIYQPVYSPWVNHVERLW
QALHETITRNHQCRSMWQLLKKVHHFMDTVSPFPGGKHGLAKV
Blast result :
Comments
There is 1 copy of ISSpu2 on the chromosome of Shewanella putrefaciens CN32. The ISSpu2 tranposase has 88% identity to IS630.
References
1] Romine, M. F. (2008) Direct submission.