ISCro5
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Citrobacter rodentium | Citrobacter rodentium ICC168 |
DNA section
IS Length : 1362 bp
Ends
IR Length : 13
IRL : cgatgtgATGGACACCTCCCACCTTACGGCATCATTAGTGCCAGACTGAG
IRR : ----tatATGGACACCTCCCGTTATGCAAGCCACTAATCATGTTTTGTGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGC | CGGATAA | 0 |
DNA sequence
CGATGTGATGGACACCTCCCACCTTACGGCATCATTAGTGCCAGACTGAGGTGTTAACTTCAGTTCCCAGGGGGAGGTGTCCACATGAATATTAAACGTA
TTGGCCTCGATCTCGCAAAGCTGGTTTTTCAGCTTCATGGCGTTGATCACCATGAACGCGTTGTTCTCCGTAAAACACTGCGCCGTTCACAGATGCTTGT
CTTTTTCGCCCGGCTTGAGCCCTGTCTTATTGGTATCGAAGCCTGCGGCTCCTCGCATTACTGGGCCAGAGAGTTGACCCGACTCGGGCACTCTGTCCGT
ATTATCCCGCCCCGGTTCGTTAAGCCTTATCTGAAGGGCAACAAAAACGATGCCAATGATGCCGAAGCTATCTGCGAGGCCGTCAGCAGGCCCGGTATGC
GCTATGTTGCCGTTAAATCTGAAGCGCAACAGAGCATGCAGGCAGAGCACCGGGTTCGTGCCCGCCTGCTTCGCGACAGAACGGCGCTCAGCAACGAGAT
ACGCGGCATGCTGGGCGAGTTTGGCCTTGTGCTTCCTGTCGGGCTTGCCGCGCTCAGACGAGCACTGCCGGAGATACTTTCTCAGCAGGAACAATGGGAT
AACCGCTTTATCCGTCTGCTGTGCGAGTTAGCGGAGGAATTGCAGATACTGGATGACCGACTGGCGCGTTATGACCGGCGGCTTAAACAGCTGGCGCAGG
ACGATGACCGTATCAGGCGGCTTCAGGAGATCAGCGGGATTGGCCCGGTAACCGCCAGCGCGCTGGTTGCAGCAGTGGGTAATGCAAGACAGTTTAAAAA
CGGACGTGAAATGGCGGCCTGGCTGGGGCTGGTTCCCGGGCAGCACTCAAGCGGCGGAAAAAACCGGCTGGGTCACATCAGTAAGCGGGGTGACAGCTAC
CTGCGAACGCTGCTGATCCACGGAGCGCGTGCAGTACTGAATGCCTGCGGTAACAAGGAAGACCGTCGAAGCCAGTGGCTGCAGTCAGTGGCAGAAAGAC
GTAACAGGAATGTCGCAACGGTCGCCATGGCGAACAAAAATGCCCGTATCGCGTGGGCCGTGCTGAGTCGGGAAGAAGAATATCGCGTGATGTAGAACGA
AACGGTAAGAGTGAGAGAAAAGAATAATCCTGTCGTGAGATTGCAGAGTCATTAAGCACAAATGTGTAACAGGTAAGACCGACACCTGAAAACTCCGGTT
TATCCGAAGGCTCCCTGCGAAGCAAAGCCGTCAGGCCGAATGGAACCAGGTGTGCAGATAACATCATGGCCGGGCACGACGGTGCCGAAAGAAAGGCCGG
ATATACGAAAGCATCTTACTCCCGTTACACAAAACATGATTAGTGGCTTGCATAACGGGAGGTGTCCATATA
TTGGCCTCGATCTCGCAAAGCTGGTTTTTCAGCTTCATGGCGTTGATCACCATGAACGCGTTGTTCTCCGTAAAACACTGCGCCGTTCACAGATGCTTGT
CTTTTTCGCCCGGCTTGAGCCCTGTCTTATTGGTATCGAAGCCTGCGGCTCCTCGCATTACTGGGCCAGAGAGTTGACCCGACTCGGGCACTCTGTCCGT
ATTATCCCGCCCCGGTTCGTTAAGCCTTATCTGAAGGGCAACAAAAACGATGCCAATGATGCCGAAGCTATCTGCGAGGCCGTCAGCAGGCCCGGTATGC
GCTATGTTGCCGTTAAATCTGAAGCGCAACAGAGCATGCAGGCAGAGCACCGGGTTCGTGCCCGCCTGCTTCGCGACAGAACGGCGCTCAGCAACGAGAT
ACGCGGCATGCTGGGCGAGTTTGGCCTTGTGCTTCCTGTCGGGCTTGCCGCGCTCAGACGAGCACTGCCGGAGATACTTTCTCAGCAGGAACAATGGGAT
AACCGCTTTATCCGTCTGCTGTGCGAGTTAGCGGAGGAATTGCAGATACTGGATGACCGACTGGCGCGTTATGACCGGCGGCTTAAACAGCTGGCGCAGG
ACGATGACCGTATCAGGCGGCTTCAGGAGATCAGCGGGATTGGCCCGGTAACCGCCAGCGCGCTGGTTGCAGCAGTGGGTAATGCAAGACAGTTTAAAAA
CGGACGTGAAATGGCGGCCTGGCTGGGGCTGGTTCCCGGGCAGCACTCAAGCGGCGGAAAAAACCGGCTGGGTCACATCAGTAAGCGGGGTGACAGCTAC
CTGCGAACGCTGCTGATCCACGGAGCGCGTGCAGTACTGAATGCCTGCGGTAACAAGGAAGACCGTCGAAGCCAGTGGCTGCAGTCAGTGGCAGAAAGAC
GTAACAGGAATGTCGCAACGGTCGCCATGGCGAACAAAAATGCCCGTATCGCGTGGGCCGTGCTGAGTCGGGAAGAAGAATATCGCGTGATGTAGAACGA
AACGGTAAGAGTGAGAGAAAAGAATAATCCTGTCGTGAGATTGCAGAGTCATTAAGCACAAATGTGTAACAGGTAAGACCGACACCTGAAAACTCCGGTT
TATCCGAAGGCTCCCTGCGAAGCAAAGCCGTCAGGCCGAATGGAACCAGGTGTGCAGATAACATCATGGCCGGGCACGACGGTGCCGAAAGAAAGGCCGG
ATATACGAAAGCATCTTACTCCCGTTACACAAAACATGATTAGTGGCTTGCATAACGGGAGGTGTCCATATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1011 bp | 336 aa | 85 | 1095 | + | No |
Chemistry : DEDD
ORF sequence :
MNIKRIGLDLAKLVFQLHGVDHHERVVLRKTLRRSQMLVFFARLEPCLIGIEACGSSHYWARELTRLGHSVRIIPPRFVKPYLKGNKNDANDAEAICEAV
SRPGMRYVAVKSEAQQSMQAEHRVRARLLRDRTALSNEIRGMLGEFGLVLPVGLAALRRALPEILSQQEQWDNRFIRLLCELAEELQILDDRLARYDRRL
KQLAQDDDRIRRLQEISGIGPVTASALVAAVGNARQFKNGREMAAWLGLVPGQHSSGGKNRLGHISKRGDSYLRTLLIHGARAVLNACGNKEDRRSQWLQ
SVAERRNRNVATVAMANKNARIAWAVLSREEEYRVM
SRPGMRYVAVKSEAQQSMQAEHRVRARLLRDRTALSNEIRGMLGEFGLVLPVGLAALRRALPEILSQQEQWDNRFIRLLCELAEELQILDDRLARYDRRL
KQLAQDDDRIRRLQEISGIGPVTASALVAAVGNARQFKNGREMAAWLGLVPGQHSSGGKNRLGHISKRGDSYLRTLLIHGARAVLNACGNKEDRRSQWLQ
SVAERRNRNVATVAMANKNARIAWAVLSREEEYRVM
Blast result :
Comments
5 copies of ISCro5 found in the chromosome of Citrobacter rodentium at coordinates: cpl(161908..163279); cpl(488674..490045); cpl(1323741..1325112); cpl(2415484..2416855); 4009202..4010573.
None have direct repeats but all have the same flanking sequences; aggc (ISCro5) cggataa.
ISCro5 is 77% aa similar to ISAzvi2.
None have direct repeats but all have the same flanking sequences; aggc (ISCro5) cggataa.
ISCro5 is 77% aa similar to ISAzvi2.
References
1] Nicola Petty (The Wellcome Trust Sanger Institute) (2008) Direct submission.