ISCro5

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Citrobacter rodentium
Citrobacter rodentium ICC168
DNA section
IS Length : 1362 bp

Ends


IR Length : 13

IRL : cgatgtgATGGACACCTCCCACCTTACGGCATCATTAGTGCCAGACTGAG
IRR : ----tatATGGACACCTCCCGTTATGCAAGCCACTAATCATGTTTTGTGT

Insertion site


Left flankDirect repeatRight flankDR Length
AGGCCGGATAA0

DNA sequence

CGATGTGATGGACACCTCCCACCTTACGGCATCATTAGTGCCAGACTGAGGTGTTAACTTCAGTTCCCAGGGGGAGGTGTCCACATGAATATTAAACGTA
TTGGCCTCGATCTCGCAAAGCTGGTTTTTCAGCTTCATGGCGTTGATCACCATGAACGCGTTGTTCTCCGTAAAACACTGCGCCGTTCACAGATGCTTGT
CTTTTTCGCCCGGCTTGAGCCCTGTCTTATTGGTATCGAAGCCTGCGGCTCCTCGCATTACTGGGCCAGAGAGTTGACCCGACTCGGGCACTCTGTCCGT
ATTATCCCGCCCCGGTTCGTTAAGCCTTATCTGAAGGGCAACAAAAACGATGCCAATGATGCCGAAGCTATCTGCGAGGCCGTCAGCAGGCCCGGTATGC
GCTATGTTGCCGTTAAATCTGAAGCGCAACAGAGCATGCAGGCAGAGCACCGGGTTCGTGCCCGCCTGCTTCGCGACAGAACGGCGCTCAGCAACGAGAT
ACGCGGCATGCTGGGCGAGTTTGGCCTTGTGCTTCCTGTCGGGCTTGCCGCGCTCAGACGAGCACTGCCGGAGATACTTTCTCAGCAGGAACAATGGGAT
AACCGCTTTATCCGTCTGCTGTGCGAGTTAGCGGAGGAATTGCAGATACTGGATGACCGACTGGCGCGTTATGACCGGCGGCTTAAACAGCTGGCGCAGG
ACGATGACCGTATCAGGCGGCTTCAGGAGATCAGCGGGATTGGCCCGGTAACCGCCAGCGCGCTGGTTGCAGCAGTGGGTAATGCAAGACAGTTTAAAAA
CGGACGTGAAATGGCGGCCTGGCTGGGGCTGGTTCCCGGGCAGCACTCAAGCGGCGGAAAAAACCGGCTGGGTCACATCAGTAAGCGGGGTGACAGCTAC
CTGCGAACGCTGCTGATCCACGGAGCGCGTGCAGTACTGAATGCCTGCGGTAACAAGGAAGACCGTCGAAGCCAGTGGCTGCAGTCAGTGGCAGAAAGAC
GTAACAGGAATGTCGCAACGGTCGCCATGGCGAACAAAAATGCCCGTATCGCGTGGGCCGTGCTGAGTCGGGAAGAAGAATATCGCGTGATGTAGAACGA
AACGGTAAGAGTGAGAGAAAAGAATAATCCTGTCGTGAGATTGCAGAGTCATTAAGCACAAATGTGTAACAGGTAAGACCGACACCTGAAAACTCCGGTT
TATCCGAAGGCTCCCTGCGAAGCAAAGCCGTCAGGCCGAATGGAACCAGGTGTGCAGATAACATCATGGCCGGGCACGACGGTGCCGAAAGAAAGGCCGG
ATATACGAAAGCATCTTACTCCCGTTACACAAAACATGATTAGTGGCTTGCATAACGGGAGGTGTCCATATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1011 bp336 aa851095+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNIKRIGLDLAKLVFQLHGVDHHERVVLRKTLRRSQMLVFFARLEPCLIGIEACGSSHYWARELTRLGHSVRIIPPRFVKPYLKGNKNDANDAEAICEAV
SRPGMRYVAVKSEAQQSMQAEHRVRARLLRDRTALSNEIRGMLGEFGLVLPVGLAALRRALPEILSQQEQWDNRFIRLLCELAEELQILDDRLARYDRRL
KQLAQDDDRIRRLQEISGIGPVTASALVAAVGNARQFKNGREMAAWLGLVPGQHSSGGKNRLGHISKRGDSYLRTLLIHGARAVLNACGNKEDRRSQWLQ
SVAERRNRNVATVAMANKNARIAWAVLSREEEYRVM

 

Blast result :
Comments
5 copies of ISCro5 found in the chromosome of Citrobacter rodentium at coordinates: cpl(161908..163279); cpl(488674..490045); cpl(1323741..1325112); cpl(2415484..2416855); 4009202..4010573.
None have direct repeats but all have the same flanking sequences; aggc (ISCro5) cggataa.
ISCro5 is 77% aa similar to ISAzvi2.
References
1] Nicola Petty (The Wellcome Trust Sanger Institute) (2008) Direct submission.