ISSbe2

  • Family IS1595
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIC01000028 ND Shewanella benthica
Shewanella benthica KT99
DNA section
IS Length : 975 bp

Ends


IR Length : 17/24

IRL : ACATGCCTCTGCATATGAGTCAGTTTCAGTCTATTCTTATTGTATAAATC
IRR : ACATGCTTATGTACCTCACTCAGTACGAATGTACAGGCGCATGAATTATT

Insertion site


Left flankDirect repeatRight flankDR Length
TTCAGCTGGTGAAATAATGATGTTAGCCCTACTA6

DNA sequence

ACATGCCTCTGCATATGAGTCAGTTTCAGTCTATTCTTATTGTATAAATCACGACTAGAAGTGAGATTGACGATGAAAACGCCTGAAGCTAGTTTTTTTG
AATGGCAACGCCAGTTTGGTTCTGAAATTGATTGTTTAAACCACCTAAAGCACATCAGATGGCCTACTGGTTTTATTTGTCCTAGGTGCAGTTGTGAGCA
TAGTTATCAGCTCACTACTCGTGATGTCTATGAATGTAGTCAGTGTCATAAACAAACATCTGTCACCGCAGATACTGTATTCCATGGTAGCCGTATTCCC
TTAGCGAAGTGGTTTTGGGCCATCTACTTTCTAGGCTCAGATAAAGGCAGCATTTCAGCATTGAGGCTCAGTAAACTCATTGAGGTTAATTGGCGAACGG
CACGCTTAATATTGAGCAAGTTGAGAACGGCAATGGGTCATAGAGACAGTCTATATAGGCTTTCAGGTCTCATTGAAATTGATGATGCCTTCGTTGGGGG
AAAGAGAAAAGGTAAACGCGGACGTGGAGCCGCAGGGAAAACACCTGTGTTAATTGCTGTTGAAAGCAAAGGGAAACGCGCGGGATTTATCGCTATGCAG
GCCGTCGACAGTGTTTGTCATGAAGCCGTTAACGATTTTGTTGCTAGGCACTTAAATGCACAGCAAGAAGTTCATACTGACGGACTAGCCGCTTTGAATA
TCATAGATAACACTCAACAGCATGAAGCTAGGGTTACACCGAGTGAGTTGGTCGACGAATGGTTGCCTTGGGTTCATATTGCAATAGGTAACTTAAAAGC
CTTTTTACTCGGCACATTTCATGGAGTTTCGGGAAAATACCTTCAAGAATACCTTAGTGAGTTCTGTTATCGGTTTAACCGAAGAAAAATGGAAAAAGAA
ATCCCTAATAGGCGGTTAAATCTGGCAATAATTCATGCGCCTGTACATTCGTACTGAGTGAGGTACATAAGCATGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa73957+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKTPEASFFEWQRQFGSEIDCLNHLKHIRWPTGFICPRCSCEHSYQLTTRDVYECSQCHKQTSVTADTVFHGSRIPLAKWFWAIYFLGSDKGSISALRLS
KLIEVNWRTARLILSKLRTAMGHRDSLYRLSGLIEIDDAFVGGKRKGKRGRGAAGKTPVLIAVESKGKRAGFIAMQAVDSVCHEAVNDFVARHLNAQQEV
HTDGLAALNIIDNTQQHEARVTPSELVDEWLPWVHIAIGNLKAFLLGTFHGVSGKYLQEYLSEFCYRFNRRKMEKEIPNRRLNLAIIHAPVHSY

 

Blast result :
Comments
ISSbe2 is 86% aa similar to ISPpr5.
References
1] Yayanos,A., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C
(2007) Direct submission GenBank.