ISSbe2
- Family IS1595
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIC01000028 | ND | Shewanella benthica | Shewanella benthica KT99 |
DNA section
IS Length : 975 bp
Ends
IR Length : 17/24
IRL : ACATGCCTCTGCATATGAGTCAGTTTCAGTCTATTCTTATTGTATAAATC
IRR : ACATGCTTATGTACCTCACTCAGTACGAATGTACAGGCGCATGAATTATT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCAGCTGGTGAAAT | AATGAT | GTTAGCCCTACTA | 6 |
DNA sequence
ACATGCCTCTGCATATGAGTCAGTTTCAGTCTATTCTTATTGTATAAATCACGACTAGAAGTGAGATTGACGATGAAAACGCCTGAAGCTAGTTTTTTTG
AATGGCAACGCCAGTTTGGTTCTGAAATTGATTGTTTAAACCACCTAAAGCACATCAGATGGCCTACTGGTTTTATTTGTCCTAGGTGCAGTTGTGAGCA
TAGTTATCAGCTCACTACTCGTGATGTCTATGAATGTAGTCAGTGTCATAAACAAACATCTGTCACCGCAGATACTGTATTCCATGGTAGCCGTATTCCC
TTAGCGAAGTGGTTTTGGGCCATCTACTTTCTAGGCTCAGATAAAGGCAGCATTTCAGCATTGAGGCTCAGTAAACTCATTGAGGTTAATTGGCGAACGG
CACGCTTAATATTGAGCAAGTTGAGAACGGCAATGGGTCATAGAGACAGTCTATATAGGCTTTCAGGTCTCATTGAAATTGATGATGCCTTCGTTGGGGG
AAAGAGAAAAGGTAAACGCGGACGTGGAGCCGCAGGGAAAACACCTGTGTTAATTGCTGTTGAAAGCAAAGGGAAACGCGCGGGATTTATCGCTATGCAG
GCCGTCGACAGTGTTTGTCATGAAGCCGTTAACGATTTTGTTGCTAGGCACTTAAATGCACAGCAAGAAGTTCATACTGACGGACTAGCCGCTTTGAATA
TCATAGATAACACTCAACAGCATGAAGCTAGGGTTACACCGAGTGAGTTGGTCGACGAATGGTTGCCTTGGGTTCATATTGCAATAGGTAACTTAAAAGC
CTTTTTACTCGGCACATTTCATGGAGTTTCGGGAAAATACCTTCAAGAATACCTTAGTGAGTTCTGTTATCGGTTTAACCGAAGAAAAATGGAAAAAGAA
ATCCCTAATAGGCGGTTAAATCTGGCAATAATTCATGCGCCTGTACATTCGTACTGAGTGAGGTACATAAGCATGT
AATGGCAACGCCAGTTTGGTTCTGAAATTGATTGTTTAAACCACCTAAAGCACATCAGATGGCCTACTGGTTTTATTTGTCCTAGGTGCAGTTGTGAGCA
TAGTTATCAGCTCACTACTCGTGATGTCTATGAATGTAGTCAGTGTCATAAACAAACATCTGTCACCGCAGATACTGTATTCCATGGTAGCCGTATTCCC
TTAGCGAAGTGGTTTTGGGCCATCTACTTTCTAGGCTCAGATAAAGGCAGCATTTCAGCATTGAGGCTCAGTAAACTCATTGAGGTTAATTGGCGAACGG
CACGCTTAATATTGAGCAAGTTGAGAACGGCAATGGGTCATAGAGACAGTCTATATAGGCTTTCAGGTCTCATTGAAATTGATGATGCCTTCGTTGGGGG
AAAGAGAAAAGGTAAACGCGGACGTGGAGCCGCAGGGAAAACACCTGTGTTAATTGCTGTTGAAAGCAAAGGGAAACGCGCGGGATTTATCGCTATGCAG
GCCGTCGACAGTGTTTGTCATGAAGCCGTTAACGATTTTGTTGCTAGGCACTTAAATGCACAGCAAGAAGTTCATACTGACGGACTAGCCGCTTTGAATA
TCATAGATAACACTCAACAGCATGAAGCTAGGGTTACACCGAGTGAGTTGGTCGACGAATGGTTGCCTTGGGTTCATATTGCAATAGGTAACTTAAAAGC
CTTTTTACTCGGCACATTTCATGGAGTTTCGGGAAAATACCTTCAAGAATACCTTAGTGAGTTCTGTTATCGGTTTAACCGAAGAAAAATGGAAAAAGAA
ATCCCTAATAGGCGGTTAAATCTGGCAATAATTCATGCGCCTGTACATTCGTACTGAGTGAGGTACATAAGCATGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 73 | 957 | + | No |
Chemistry : DDE
ORF sequence :
MKTPEASFFEWQRQFGSEIDCLNHLKHIRWPTGFICPRCSCEHSYQLTTRDVYECSQCHKQTSVTADTVFHGSRIPLAKWFWAIYFLGSDKGSISALRLS
KLIEVNWRTARLILSKLRTAMGHRDSLYRLSGLIEIDDAFVGGKRKGKRGRGAAGKTPVLIAVESKGKRAGFIAMQAVDSVCHEAVNDFVARHLNAQQEV
HTDGLAALNIIDNTQQHEARVTPSELVDEWLPWVHIAIGNLKAFLLGTFHGVSGKYLQEYLSEFCYRFNRRKMEKEIPNRRLNLAIIHAPVHSY
KLIEVNWRTARLILSKLRTAMGHRDSLYRLSGLIEIDDAFVGGKRKGKRGRGAAGKTPVLIAVESKGKRAGFIAMQAVDSVCHEAVNDFVARHLNAQQEV
HTDGLAALNIIDNTQQHEARVTPSELVDEWLPWVHIAIGNLKAFLLGTFHGVSGKYLQEYLSEFCYRFNRRKMEKEIPNRRLNLAIIHAPVHSY
Blast result :
Comments
ISSbe2 is 86% aa similar to ISPpr5.
References
1] Yayanos,A., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C
(2007) Direct submission GenBank.
(2007) Direct submission GenBank.