ISApr3

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABHC01000001 ND Alpha proteobacterium
Alpha proteobacterium BAL199
DNA section
IS Length : 1080 bp

Ends


IR Length : 35/41

IRL : CTTGCCTATCCGGTTGACTCCCATGCCCACTAGATCTAGCGTTTGGCATG
IRR : CTTGCCTATCCGGTTGTTACCCACACCCACTAAATGTAGGGTGAGTCCAT

Insertion site


Left flankDirect repeatRight flankDR Length
ACTGTTTCTGACGGTTCATGGAATATATCGAA8

DNA sequence

CTTGCCTATCCGGTTGACTCCCATGCCCACTAGATCTAGCGTTTGGCATGGATGTCCTGGCCCGAGAAGATCTGCCGTTTCCGCAGTCGCTGCCGGAATT
TCAGTGCTTTTTTCCCGACGACGCGGCCTGTGCTGCATATCTCGAAAAGGCCCGCTGGAATGGTGGGTTCGTCTGCCCGAGATGCGGCGTTGTCGGCGAA
CCGTTCCGTTTCGAGGCGCGTCCGGGCGTTCTGCGCTGCCGCGCCTGTCGCAAAGACGTAAGCCTGATGGCTGGGACTGTCATGGAGCGCAGTCACACGC
CGTTGTCGACCTGGTTCTGGGCGGCTTACCTGATGGCCAGCCAGACGCCCGGAATGTCGGCCGTTCAATTTCAACGGCAACTCGGCCTGTCGCGCTATGA
GACTGCATTCGGCATCCTTCACAAGCTCCGCGCCGCGATGGTGCGCCCAGAGCGCGACAAGATTGGCGGCAAGCCGCAAGAGCATGTCGAAGTGGATGAA
ACGTGGGTTGGAGGGCGCACCCGAGGCGAGGGCCGGGGAGTCCATCACAAGGTTCTCGTCTCCTGCGCCGTGGAGGTGCGTCGCCGCAAGCCGGGAACCA
AACTCGACAATCGGAAAGACGGTCGCTACGCGGGACGCGTTCGTCTCGCCGTCGTCCCCGACCGCAGCGCCAATTCGCTCGGCAGTTTCGTCGAAAACGC
CGTTGCTCCCGGATCGCTGATCGTCACCGACGACTGGAGCGGCTATGCCGGGCTTCGCAAGCGCGGATTCGACCACCACGCGATCGCCGAATGCGGAGAC
CCGGAGATCGCAGAGGAATTCCTGCCGATCATCCACTTGGTCTTCGCCAATCTGAAGACCTGGATCAATGGCATCCATCACGGCGTCAGTGCCAAGCATC
TGCAAGCCTACCTCAACGAGTTCACGTTCCGCTTCAATCGGCGCTTCTATCCGTTCAACTCGTTCCGCTCACTGCTCGGAATCGCCGGCGGGGCCGCAGC
GCCGACCTTCGACGGGCTCTACTCGGGAGAATGGACTCACCCTACATTTAGTGGGTGTGGGTAACAACCGGATAGGCAAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1017 bp338 aa481064+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDVLAREDLPFPQSLPEFQCFFPDDAACAAYLEKARWNGGFVCPRCGVVGEPFRFEARPGVLRCRACRKDVSLMAGTVMERSHTPLSTWFWAAYLMASQT
PGMSAVQFQRQLGLSRYETAFGILHKLRAAMVRPERDKIGGKPQEHVEVDETWVGGRTRGEGRGVHHKVLVSCAVEVRRRKPGTKLDNRKDGRYAGRVRL
AVVPDRSANSLGSFVENAVAPGSLIVTDDWSGYAGLRKRGFDHHAIAECGDPEIAEEFLPIIHLVFANLKTWINGIHHGVSAKHLQAYLNEFTFRFNRRF
YPFNSFRSLLGIAGGAAAPTFDGLYSGEWTHPTFSGCG

 

Blast result :
Comments
ISApr3 is 95% aa similar to ISAcr1.
References
1] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.