ISApr2

  • Family IS1595
  • Group ISSod11
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABHC01000017 ND Alpha proteobacterium
Alpha proteobacterium BAL199
DNA section
IS Length : 1029 bp

Ends


IR Length : 25/29

IRL : GGCTTATCCCCGATACTCCGGTGCTACCAGATTTAGTGATGTGGCGCGAA
IRR : GGCTTATCCCTGAGTCTCCGGTGCTATCAACATCTTGTAGGTGGCAGGAG

Insertion site


Left flankDirect repeatRight flankDR Length
TGCATGTGTCATTCTACGAAGAATATGCCTGCGGTGTTT12

DNA sequence

GGCTTATCCCCGATACTCCGGTGCTACCAGATTTAGTGATGTGGCGCGAAGCTCGTGATAGAACATAATAAGAACATCACGGCTTCGGAGTGCCCCGCGA
TGACGGATTTTCCCCGCTCGCTGCTGGAGTTCCAGCAGCGCTTTCCGGATGAGGCGGCCTGCGCCGGCTACCTGCGACAGTTGCGCTGGCCGGAGGGTTT
CGTGTGCCCAGCCTGCGGCGGCACCCGGGGCTGGGCGCTGGCGACCAAGGCCCACACCCACGAATGCGCCGACTGCCACAAGCAGACCTCGGTGACGGCC
GGCACCGTGATGCACGGCTCCAAGCTGCCGCTCACCGTCTGGTTCTGGGCCGCCTACCTGATGGCCACCCACTCCAACGGCATCTCGGCCCTGCAAGTCC
AGAAGCAACTCGGGCTCGGATCTTACAAGAGCGCCTGGCTGCTGTGCGCCAAGCTGCGCCGGGCCATGGTCGCGCCCGAGCGCTCGCCGCTGGCAGGCCT
GGTCGAGGTCGACGAGGCCTCGATCGCCTGCCGCACCAAGGACGACCCACCGGCCGGCGGCGGCGGCCGCAGTCACCAGGGAAAGCTGCTCATCGCCGGC
GCCGTCGAGGTCGGCGATGGCGGCCCCGGCCGCATCCGCCTGGCGCAGATCGCGGACTTCTCCGCCCGCAGTCTGCACGCCTTCCTCGCCGTAAACCTCG
CGCCCGGCACCACCGCCAGGACCGACGGCTGGGCCAGCTACCCGGGCGCCCCCGACCTCAACCACGATCCGCGCGTCGTCGGCGCCATGGCCGCACATAT
CGTGCTGCCCTGGGTCCATCGCGTGTTCTCCAACCTCAAGACCTGGGCGCTTGGCGTATACCACGGCCTGCGGCCCCAGCATCTGCAAGCCTACCTCGAC
GAGTTCGTGTTCCGGTTCAACCGCCGCCGTACCCGGCACGCCGCATTCCGCTCCATCCTCGCCATCGGCGTCGCCATCACTCCTGCCACCTACAAGATGT
TGATAGCACCGGAGACTCAGGGATAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
927 bp308 aa1001026+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTDFPRSLLEFQQRFPDEAACAGYLRQLRWPEGFVCPACGGTRGWALATKAHTHECADCHKQTSVTAGTVMHGSKLPLTVWFWAAYLMATHSNGISALQV
QKQLGLGSYKSAWLLCAKLRRAMVAPERSPLAGLVEVDEASIACRTKDDPPAGGGGRSHQGKLLIAGAVEVGDGGPGRIRLAQIADFSARSLHAFLAVNL
APGTTARTDGWASYPGAPDLNHDPRVVGAMAAHIVLPWVHRVFSNLKTWALGVYHGLRPQHLQAYLDEFVFRFNRRRTRHAAFRSILAIGVAITPATYKM
LIAPETQG

 

Blast result :
Comments
ISApr2 is 57% aa similar to ISNmo1.
References
1] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.