ISSer1

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009142 ND Saccharopolyspora erythraea
Saccharopolyspora erythraea NRRL 2338
DNA section
IS Length : 1447 bp

Ends


Left end : CCCGTTACCTTCTTCGTGGTCCCCAGCCGGGGATCTTCTGGTCGCCTGGCCTGGCATGACTGACTGCCCCTGTCGTTGATGATCCGGGGGGTGTTGTCAC
Right end : GACGCCGCTGCGACGTCCTGCACGCCATGCTCCGCACCAAAACGAAATACCAAGCACCAGCCCCTCAAGCCGCTTGACAACCGACATAGGGACACCCCCC

Insertion site


Left flankDirect repeatRight flankDR Length
GGGCTGTCCGTGGATTTTCCGTTAGCTTTTTCGTGGCTC0

DNA sequence

CCCGTTACCTTCTTCGTGGTCCCCAGCCGGGGATCTTCTGGTCGCCTGGCCTGGCATGACTGACTGCCCCTGTCGTTGATGATCCGGGGGGTGTTGTCAC
CAGGCCAGGGGCGCCAGCCGACCGCTGATAGGGACATGATCGCCTTCGGGCAGGTCTCGTCGTAGGCGTGGCTGCCGGCAGCTGACGCCGGATCGGCGAC
CAGGCTGCGACGAGTCGAAGGACACCACCTGTGACCAGTGGTTATGACGTGTTCTGCGGATTGGACGTCGGTAAAGGCGCGCACCACGCGACCGGCCTGG
CGCCGGACGCCACCCGGCTGCACGACGCGGCACTGCCCAACACCGAAGCCGGATTGCGCAAGGTCTTCGACCGGCTCGCGCGGCACGGGCAGGTGCTGGT
GGTGGTGGATCAGCCGGCCTCGATCGGTGCCCTGCCGGTGGCCGTGGCCCGAGCCTGCGGGCATGACGTGGCCTATCTGCCGGGCCTGGCCATGCGCCGG
ATCGCTGACCTGCACCCGGGCAACGCCAAGACCGACGCCCGCGACGCCTACGTCATCGCTGATGCCGCCCGCACCTTGCCGCACGCCCTGCGGCGGGTCG
ACACCGGCGAGGAAACCCTGGCCGAACTGGAGGTGCTCGTCGGGTTCGACGACGACCTCGCAGGCGAGGCCACCAGGATCGGCAACCGCATCCGGGGCCT
GCTGACCCAGATCCATCCCGCCCTGGAGCGCGTCCTGGGACCCAAGATCCAGCACCCCGCGGTGCTGGAAATCCTCTCCCGGTGCGGCGGGCCTGACGGG
ATCCGCAAAGCCGGACAACGACAGCTGACCTCGATCGCGGCCACCCGCGCTCCCCGCATGGGCCAGGCCCTCGTCGAGGCGATCGTGTCCGCGCTCGACG
AACAGACCGTGTCGGTGCCCGGCGCCAAGACCGCCGAGCTCGTACTCCCCCGCCTGGCCGATTCGCTGAAAACCGTGCTGCAGCAACGGAGAACAGTCGC
CGACGAGGTCGAAGGGATACTCGATGCGCACCCTCTTGCCGGGGTCCTGACCTCCATGCCCGGCATCGGGGTCAGGACCGCAGCCCGCATCCTCCTCGAA
GTCGGCGACGGCTCGGCGTTCAAAACCTCCGGACATCTGGCCGCCTACGCAGGCCTGGCCCCGGTCACCCGCCGCTCCGGCAGCTCCATCCGAGGAGAAC
ACCCCAACCGAGGCGGCAACAAACATCTCAAACGGGCGTTCTTCCTCGCCGCCTTCGCCGCCCTGGCCGACCCCACCAGCAGGGCCTACTACCAGCGGAA
ACGAGACGAAGGCAAGAAACACAACGCCGCCCTCATCTGCCTGGCCCGACGCCGCTGCGACGTCCTGCACGCCATGCTCCGCACCAAAACGAAATACCAA
GCACCAGCCCCTCAAGCCGCTTGACAACCGACATAGGGACACCCCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1164 bp387 aa2611424+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MDVGKGAHHATGLAPDATRLHDAALPNTEAGLRKVFDRLARHGQVLVVVDQPASIGALPVAVARACGHDVAYLPGLAMRRIADLHPGNAKTDARDAYVIA
DAARTLPHALRRVDTGEETLAELEVLVGFDDDLAGEATRIGNRIRGLLTQIHPALERVLGPKIQHPAVLEILSRCGGPDGIRKAGQRQLTSIAATRAPRM
GQALVEAIVSALDEQTVSVPGAKTAELVLPRLADSLKTVLQQRRTVADEVEGILDAHPLAGVLTSMPGIGVRTAARILLEVGDGSAFKTSGHLAAYAGLA
PVTRRSGSSIRGEHPNRGGNKHLKRAFFLAAFAALADPTSRAYYQRKRDEGKKHNAALICLARRRCDVLHAMLRTKTKYQAPAPQAA

 

Blast result :
Comments
ISSer1 is 74% aa similar to IS110.
References
1] Oliynyk,M., Samborskyy,M., Lester,J.B., Mironenko,T., Scott,N., Dickens,S., Haydock,S.F. and Leadlay,P.F. (2007) Nat. Biotechnol. 25 (4), 447-453.