ISSer1
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009142 | ND | Saccharopolyspora erythraea | Saccharopolyspora erythraea NRRL 2338 |
DNA section
IS Length : 1447 bp
Ends
Left end : CCCGTTACCTTCTTCGTGGTCCCCAGCCGGGGATCTTCTGGTCGCCTGGCCTGGCATGACTGACTGCCCCTGTCGTTGATGATCCGGGGGGTGTTGTCAC
Right end : GACGCCGCTGCGACGTCCTGCACGCCATGCTCCGCACCAAAACGAAATACCAAGCACCAGCCCCTCAAGCCGCTTGACAACCGACATAGGGACACCCCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGCTGTCCGTGGATTTTCC | GTTAGCTTTTTCGTGGCTC | 0 |
DNA sequence
CCCGTTACCTTCTTCGTGGTCCCCAGCCGGGGATCTTCTGGTCGCCTGGCCTGGCATGACTGACTGCCCCTGTCGTTGATGATCCGGGGGGTGTTGTCAC
CAGGCCAGGGGCGCCAGCCGACCGCTGATAGGGACATGATCGCCTTCGGGCAGGTCTCGTCGTAGGCGTGGCTGCCGGCAGCTGACGCCGGATCGGCGAC
CAGGCTGCGACGAGTCGAAGGACACCACCTGTGACCAGTGGTTATGACGTGTTCTGCGGATTGGACGTCGGTAAAGGCGCGCACCACGCGACCGGCCTGG
CGCCGGACGCCACCCGGCTGCACGACGCGGCACTGCCCAACACCGAAGCCGGATTGCGCAAGGTCTTCGACCGGCTCGCGCGGCACGGGCAGGTGCTGGT
GGTGGTGGATCAGCCGGCCTCGATCGGTGCCCTGCCGGTGGCCGTGGCCCGAGCCTGCGGGCATGACGTGGCCTATCTGCCGGGCCTGGCCATGCGCCGG
ATCGCTGACCTGCACCCGGGCAACGCCAAGACCGACGCCCGCGACGCCTACGTCATCGCTGATGCCGCCCGCACCTTGCCGCACGCCCTGCGGCGGGTCG
ACACCGGCGAGGAAACCCTGGCCGAACTGGAGGTGCTCGTCGGGTTCGACGACGACCTCGCAGGCGAGGCCACCAGGATCGGCAACCGCATCCGGGGCCT
GCTGACCCAGATCCATCCCGCCCTGGAGCGCGTCCTGGGACCCAAGATCCAGCACCCCGCGGTGCTGGAAATCCTCTCCCGGTGCGGCGGGCCTGACGGG
ATCCGCAAAGCCGGACAACGACAGCTGACCTCGATCGCGGCCACCCGCGCTCCCCGCATGGGCCAGGCCCTCGTCGAGGCGATCGTGTCCGCGCTCGACG
AACAGACCGTGTCGGTGCCCGGCGCCAAGACCGCCGAGCTCGTACTCCCCCGCCTGGCCGATTCGCTGAAAACCGTGCTGCAGCAACGGAGAACAGTCGC
CGACGAGGTCGAAGGGATACTCGATGCGCACCCTCTTGCCGGGGTCCTGACCTCCATGCCCGGCATCGGGGTCAGGACCGCAGCCCGCATCCTCCTCGAA
GTCGGCGACGGCTCGGCGTTCAAAACCTCCGGACATCTGGCCGCCTACGCAGGCCTGGCCCCGGTCACCCGCCGCTCCGGCAGCTCCATCCGAGGAGAAC
ACCCCAACCGAGGCGGCAACAAACATCTCAAACGGGCGTTCTTCCTCGCCGCCTTCGCCGCCCTGGCCGACCCCACCAGCAGGGCCTACTACCAGCGGAA
ACGAGACGAAGGCAAGAAACACAACGCCGCCCTCATCTGCCTGGCCCGACGCCGCTGCGACGTCCTGCACGCCATGCTCCGCACCAAAACGAAATACCAA
GCACCAGCCCCTCAAGCCGCTTGACAACCGACATAGGGACACCCCCC
CAGGCCAGGGGCGCCAGCCGACCGCTGATAGGGACATGATCGCCTTCGGGCAGGTCTCGTCGTAGGCGTGGCTGCCGGCAGCTGACGCCGGATCGGCGAC
CAGGCTGCGACGAGTCGAAGGACACCACCTGTGACCAGTGGTTATGACGTGTTCTGCGGATTGGACGTCGGTAAAGGCGCGCACCACGCGACCGGCCTGG
CGCCGGACGCCACCCGGCTGCACGACGCGGCACTGCCCAACACCGAAGCCGGATTGCGCAAGGTCTTCGACCGGCTCGCGCGGCACGGGCAGGTGCTGGT
GGTGGTGGATCAGCCGGCCTCGATCGGTGCCCTGCCGGTGGCCGTGGCCCGAGCCTGCGGGCATGACGTGGCCTATCTGCCGGGCCTGGCCATGCGCCGG
ATCGCTGACCTGCACCCGGGCAACGCCAAGACCGACGCCCGCGACGCCTACGTCATCGCTGATGCCGCCCGCACCTTGCCGCACGCCCTGCGGCGGGTCG
ACACCGGCGAGGAAACCCTGGCCGAACTGGAGGTGCTCGTCGGGTTCGACGACGACCTCGCAGGCGAGGCCACCAGGATCGGCAACCGCATCCGGGGCCT
GCTGACCCAGATCCATCCCGCCCTGGAGCGCGTCCTGGGACCCAAGATCCAGCACCCCGCGGTGCTGGAAATCCTCTCCCGGTGCGGCGGGCCTGACGGG
ATCCGCAAAGCCGGACAACGACAGCTGACCTCGATCGCGGCCACCCGCGCTCCCCGCATGGGCCAGGCCCTCGTCGAGGCGATCGTGTCCGCGCTCGACG
AACAGACCGTGTCGGTGCCCGGCGCCAAGACCGCCGAGCTCGTACTCCCCCGCCTGGCCGATTCGCTGAAAACCGTGCTGCAGCAACGGAGAACAGTCGC
CGACGAGGTCGAAGGGATACTCGATGCGCACCCTCTTGCCGGGGTCCTGACCTCCATGCCCGGCATCGGGGTCAGGACCGCAGCCCGCATCCTCCTCGAA
GTCGGCGACGGCTCGGCGTTCAAAACCTCCGGACATCTGGCCGCCTACGCAGGCCTGGCCCCGGTCACCCGCCGCTCCGGCAGCTCCATCCGAGGAGAAC
ACCCCAACCGAGGCGGCAACAAACATCTCAAACGGGCGTTCTTCCTCGCCGCCTTCGCCGCCCTGGCCGACCCCACCAGCAGGGCCTACTACCAGCGGAA
ACGAGACGAAGGCAAGAAACACAACGCCGCCCTCATCTGCCTGGCCCGACGCCGCTGCGACGTCCTGCACGCCATGCTCCGCACCAAAACGAAATACCAA
GCACCAGCCCCTCAAGCCGCTTGACAACCGACATAGGGACACCCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1164 bp | 387 aa | 261 | 1424 | + | No |
Chemistry : DEDD
ORF sequence :
MDVGKGAHHATGLAPDATRLHDAALPNTEAGLRKVFDRLARHGQVLVVVDQPASIGALPVAVARACGHDVAYLPGLAMRRIADLHPGNAKTDARDAYVIA
DAARTLPHALRRVDTGEETLAELEVLVGFDDDLAGEATRIGNRIRGLLTQIHPALERVLGPKIQHPAVLEILSRCGGPDGIRKAGQRQLTSIAATRAPRM
GQALVEAIVSALDEQTVSVPGAKTAELVLPRLADSLKTVLQQRRTVADEVEGILDAHPLAGVLTSMPGIGVRTAARILLEVGDGSAFKTSGHLAAYAGLA
PVTRRSGSSIRGEHPNRGGNKHLKRAFFLAAFAALADPTSRAYYQRKRDEGKKHNAALICLARRRCDVLHAMLRTKTKYQAPAPQAA
DAARTLPHALRRVDTGEETLAELEVLVGFDDDLAGEATRIGNRIRGLLTQIHPALERVLGPKIQHPAVLEILSRCGGPDGIRKAGQRQLTSIAATRAPRM
GQALVEAIVSALDEQTVSVPGAKTAELVLPRLADSLKTVLQQRRTVADEVEGILDAHPLAGVLTSMPGIGVRTAARILLEVGDGSAFKTSGHLAAYAGLA
PVTRRSGSSIRGEHPNRGGNKHLKRAFFLAAFAALADPTSRAYYQRKRDEGKKHNAALICLARRRCDVLHAMLRTKTKYQAPAPQAA
Blast result :
Comments
ISSer1 is 74% aa similar to IS110.
References
1] Oliynyk,M., Samborskyy,M., Lester,J.B., Mironenko,T., Scott,N., Dickens,S., Haydock,S.F. and Leadlay,P.F. (2007) Nat. Biotechnol. 25 (4), 447-453.