ISSgr1

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AF525490 ND Streptomyces griseus
Streptomyces griseus
DNA section
IS Length : 1544 bp

Ends


IR Length : 12

IRL : cccccgtTATGTTTTTCGTGGTCCTGCAACGGGGCCGCTGGCCTCCGGGC
IRR : ----ctcTATGTCTTTCGTCAAGGCATCCCTGTCGGGTTTGGGGTGGTTC

Insertion site


Left flankDirect repeatRight flankDR Length
TCCGTCTCTCTCCGCACCCCCCGCGA0

DNA sequence

CCCCCGTTATGTTTTTCGTGGTCCTGCAACGGGGCCGCTGGCCTCCGGGCCCGGTATGACTGTTGCCCCCTGTCGAACGTGATGACCTGGGGGGTGGTGT
CGCCAGGGTCCGGGGGTGTTCGTCGGAGACGCTGATCAGAGGTCCGGCCACCGCCTGGTCCGGCGCAATGCCGGACGGTTCGCGGGCGGCAGGTCTGCAT
AACGTGGATGCGCGAGCACGACACCCAAGCCGAGGCCGGCACCGTCAACATCCCCGGAAAGGGCGCGATGTTCGAGATCGAAGACGTGGGCGTGTTCCTC
GGCCTGGACGTCGGCAAAACCGCTCACCACGGCCACGGACTCACCCCGGCCGGGAAGAAAATCTTCGACAAACCGCTACCCAACAGCGAGCCGAAACTGC
GGGCCGTCTTCGACAAGCTGACCGAGAAGTTCGGCACCGTCCTGGTCATCGTGGACCAGCCCGCCTCCATCGGCGCCCTCCCGCTGACCGTCGCCCGCGA
CGCCGGCTGCCGCGTCGCCTACCTGCCCGGCCTGGCCATGCGCCGCATCGCCGACCTCTACCCCGGCGAGGCCAAGACCGACGCCAAAGACGCCGCCGTC
ATCGCCGACGCCGCACGGACCATGCCGCACACCCTGCGCTGCCTGGAACTCACCGACGAGATCACCGCCGAACTCACCGTGCTGACCGGCTTCGACCAGG
ACCTCGCCGCCGAAGCCACCCGCACCTCCAACCGGATACGCGGCCTGCTCACCCAGTTCCACCCCAGCCTCGAACGCGTCCTGGGCCCCCGCCTGGACCA
CCAGGCCGTCACCTGGCTCCTGGAACGTCACGGCTCCCCGGCCGCCCTGCGCAAGGCTGGCCGCCGCCGGCTCGTCGAACTGATCCGCCCCAAGGCCCCG
CGCATGGCACAGCGCCTAATCGACGACGTCTTCGACGCCCTCGACGAGCAGACCGTCGTCGTCCCCGGCACCGGCACCCTCGACACCGTCGTGCCCTCCC
TGGCCGCTTCGCTGGCCTCCGTCCACACCCAGCGCCGTGCCATGGAAGCCCAGATCAACACCCTGCTGGAGGCCCACCCTCTTTCCCCGGTCCTGACGTC
GATGCCCGGCGTCGGCGTCAGGACCGCCGCAGTCCTACTGGTCACCGTAGGCGACGGCACCAGCTTCCCCACCGCCGCCCACCTCGCCTCCTACGCCGGC
CTCGCCCCGACCACGAAGTCGTCCGGGACCTCGATCCACGGCGAACACGCACCCCGAGGCGGAAACCGGCAGCTCAAACGCGCCATGTTCCTCTCCGCCT
TCGCCTGCATGAACGCCGACCCCGCCTCCCGCACCTACTACGACCGCCAGCGAGCCCGCGGCAAAACCCACACCCAAGCCCTCCTCCGCCTCGCTCGCCA
ACGCATCAGCGTCCTGTTCGCCATGCTCCGCGACGGCACCTTCTACGAACCCCGGACACCGAAAAACGTCGAGCTCGCCGCATAACCCCAGCAACCCCGA
ACCACCCCAAACCCGACAGGGATGCCTTGACGAAAGACATAGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1218 bp405 aa2681485+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MFEIEDVGVFLGLDVGKTAHHGHGLTPAGKKIFDKPLPNSEPKLRAVFDKLTEKFGTVLVIVDQPASIGALPLTVARDAGCRVAYLPGLAMRRIADLYPG
EAKTDAKDAAVIADAARTMPHTLRCLELTDEITAELTVLTGFDQDLAAEATRTSNRIRGLLTQFHPSLERVLGPRLDHQAVTWLLERHGSPAALRKAGRR
RLVELIRPKAPRMAQRLIDDVFDALDEQTVVVPGTGTLDTVVPSLAASLASVHTQRRAMEAQINTLLEAHPLSPVLTSMPGVGVRTAAVLLVTVGDGTSF
PTAAHLASYAGLAPTTKSSGTSIHGEHAPRGGNRQLKRAMFLSAFACMNADPASRTYYDRQRARGKTHTQALLRLARQRISVLFAMLRDGTFYEPRTPKN
VELAA

 

Blast result :
Comments
ISSgr1 is 96% aa similar to IS110.
References
1] Wendt-Pienkowski,E., Huang,Y., Zhang,J., Li,B., Jiang,H., Kwon,H., Hutchinson,C.R. and Shen,B. (2005) J. Am. Chem. Soc. 127 (47), 16442-16452 .