ISSgr1
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF525490 | ND | Streptomyces griseus | Streptomyces griseus |
DNA section
IS Length : 1544 bp
Ends
IR Length : 12
IRL : cccccgtTATGTTTTTCGTGGTCCTGCAACGGGGCCGCTGGCCTCCGGGC
IRR : ----ctcTATGTCTTTCGTCAAGGCATCCCTGTCGGGTTTGGGGTGGTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCGTCTCTCTCC | GCACCCCCCGCGA | 0 |
DNA sequence
CCCCCGTTATGTTTTTCGTGGTCCTGCAACGGGGCCGCTGGCCTCCGGGCCCGGTATGACTGTTGCCCCCTGTCGAACGTGATGACCTGGGGGGTGGTGT
CGCCAGGGTCCGGGGGTGTTCGTCGGAGACGCTGATCAGAGGTCCGGCCACCGCCTGGTCCGGCGCAATGCCGGACGGTTCGCGGGCGGCAGGTCTGCAT
AACGTGGATGCGCGAGCACGACACCCAAGCCGAGGCCGGCACCGTCAACATCCCCGGAAAGGGCGCGATGTTCGAGATCGAAGACGTGGGCGTGTTCCTC
GGCCTGGACGTCGGCAAAACCGCTCACCACGGCCACGGACTCACCCCGGCCGGGAAGAAAATCTTCGACAAACCGCTACCCAACAGCGAGCCGAAACTGC
GGGCCGTCTTCGACAAGCTGACCGAGAAGTTCGGCACCGTCCTGGTCATCGTGGACCAGCCCGCCTCCATCGGCGCCCTCCCGCTGACCGTCGCCCGCGA
CGCCGGCTGCCGCGTCGCCTACCTGCCCGGCCTGGCCATGCGCCGCATCGCCGACCTCTACCCCGGCGAGGCCAAGACCGACGCCAAAGACGCCGCCGTC
ATCGCCGACGCCGCACGGACCATGCCGCACACCCTGCGCTGCCTGGAACTCACCGACGAGATCACCGCCGAACTCACCGTGCTGACCGGCTTCGACCAGG
ACCTCGCCGCCGAAGCCACCCGCACCTCCAACCGGATACGCGGCCTGCTCACCCAGTTCCACCCCAGCCTCGAACGCGTCCTGGGCCCCCGCCTGGACCA
CCAGGCCGTCACCTGGCTCCTGGAACGTCACGGCTCCCCGGCCGCCCTGCGCAAGGCTGGCCGCCGCCGGCTCGTCGAACTGATCCGCCCCAAGGCCCCG
CGCATGGCACAGCGCCTAATCGACGACGTCTTCGACGCCCTCGACGAGCAGACCGTCGTCGTCCCCGGCACCGGCACCCTCGACACCGTCGTGCCCTCCC
TGGCCGCTTCGCTGGCCTCCGTCCACACCCAGCGCCGTGCCATGGAAGCCCAGATCAACACCCTGCTGGAGGCCCACCCTCTTTCCCCGGTCCTGACGTC
GATGCCCGGCGTCGGCGTCAGGACCGCCGCAGTCCTACTGGTCACCGTAGGCGACGGCACCAGCTTCCCCACCGCCGCCCACCTCGCCTCCTACGCCGGC
CTCGCCCCGACCACGAAGTCGTCCGGGACCTCGATCCACGGCGAACACGCACCCCGAGGCGGAAACCGGCAGCTCAAACGCGCCATGTTCCTCTCCGCCT
TCGCCTGCATGAACGCCGACCCCGCCTCCCGCACCTACTACGACCGCCAGCGAGCCCGCGGCAAAACCCACACCCAAGCCCTCCTCCGCCTCGCTCGCCA
ACGCATCAGCGTCCTGTTCGCCATGCTCCGCGACGGCACCTTCTACGAACCCCGGACACCGAAAAACGTCGAGCTCGCCGCATAACCCCAGCAACCCCGA
ACCACCCCAAACCCGACAGGGATGCCTTGACGAAAGACATAGAG
CGCCAGGGTCCGGGGGTGTTCGTCGGAGACGCTGATCAGAGGTCCGGCCACCGCCTGGTCCGGCGCAATGCCGGACGGTTCGCGGGCGGCAGGTCTGCAT
AACGTGGATGCGCGAGCACGACACCCAAGCCGAGGCCGGCACCGTCAACATCCCCGGAAAGGGCGCGATGTTCGAGATCGAAGACGTGGGCGTGTTCCTC
GGCCTGGACGTCGGCAAAACCGCTCACCACGGCCACGGACTCACCCCGGCCGGGAAGAAAATCTTCGACAAACCGCTACCCAACAGCGAGCCGAAACTGC
GGGCCGTCTTCGACAAGCTGACCGAGAAGTTCGGCACCGTCCTGGTCATCGTGGACCAGCCCGCCTCCATCGGCGCCCTCCCGCTGACCGTCGCCCGCGA
CGCCGGCTGCCGCGTCGCCTACCTGCCCGGCCTGGCCATGCGCCGCATCGCCGACCTCTACCCCGGCGAGGCCAAGACCGACGCCAAAGACGCCGCCGTC
ATCGCCGACGCCGCACGGACCATGCCGCACACCCTGCGCTGCCTGGAACTCACCGACGAGATCACCGCCGAACTCACCGTGCTGACCGGCTTCGACCAGG
ACCTCGCCGCCGAAGCCACCCGCACCTCCAACCGGATACGCGGCCTGCTCACCCAGTTCCACCCCAGCCTCGAACGCGTCCTGGGCCCCCGCCTGGACCA
CCAGGCCGTCACCTGGCTCCTGGAACGTCACGGCTCCCCGGCCGCCCTGCGCAAGGCTGGCCGCCGCCGGCTCGTCGAACTGATCCGCCCCAAGGCCCCG
CGCATGGCACAGCGCCTAATCGACGACGTCTTCGACGCCCTCGACGAGCAGACCGTCGTCGTCCCCGGCACCGGCACCCTCGACACCGTCGTGCCCTCCC
TGGCCGCTTCGCTGGCCTCCGTCCACACCCAGCGCCGTGCCATGGAAGCCCAGATCAACACCCTGCTGGAGGCCCACCCTCTTTCCCCGGTCCTGACGTC
GATGCCCGGCGTCGGCGTCAGGACCGCCGCAGTCCTACTGGTCACCGTAGGCGACGGCACCAGCTTCCCCACCGCCGCCCACCTCGCCTCCTACGCCGGC
CTCGCCCCGACCACGAAGTCGTCCGGGACCTCGATCCACGGCGAACACGCACCCCGAGGCGGAAACCGGCAGCTCAAACGCGCCATGTTCCTCTCCGCCT
TCGCCTGCATGAACGCCGACCCCGCCTCCCGCACCTACTACGACCGCCAGCGAGCCCGCGGCAAAACCCACACCCAAGCCCTCCTCCGCCTCGCTCGCCA
ACGCATCAGCGTCCTGTTCGCCATGCTCCGCGACGGCACCTTCTACGAACCCCGGACACCGAAAAACGTCGAGCTCGCCGCATAACCCCAGCAACCCCGA
ACCACCCCAAACCCGACAGGGATGCCTTGACGAAAGACATAGAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1218 bp | 405 aa | 268 | 1485 | + | No |
Chemistry : DEDD
ORF sequence :
MFEIEDVGVFLGLDVGKTAHHGHGLTPAGKKIFDKPLPNSEPKLRAVFDKLTEKFGTVLVIVDQPASIGALPLTVARDAGCRVAYLPGLAMRRIADLYPG
EAKTDAKDAAVIADAARTMPHTLRCLELTDEITAELTVLTGFDQDLAAEATRTSNRIRGLLTQFHPSLERVLGPRLDHQAVTWLLERHGSPAALRKAGRR
RLVELIRPKAPRMAQRLIDDVFDALDEQTVVVPGTGTLDTVVPSLAASLASVHTQRRAMEAQINTLLEAHPLSPVLTSMPGVGVRTAAVLLVTVGDGTSF
PTAAHLASYAGLAPTTKSSGTSIHGEHAPRGGNRQLKRAMFLSAFACMNADPASRTYYDRQRARGKTHTQALLRLARQRISVLFAMLRDGTFYEPRTPKN
VELAA
EAKTDAKDAAVIADAARTMPHTLRCLELTDEITAELTVLTGFDQDLAAEATRTSNRIRGLLTQFHPSLERVLGPRLDHQAVTWLLERHGSPAALRKAGRR
RLVELIRPKAPRMAQRLIDDVFDALDEQTVVVPGTGTLDTVVPSLAASLASVHTQRRAMEAQINTLLEAHPLSPVLTSMPGVGVRTAAVLLVTVGDGTSF
PTAAHLASYAGLAPTTKSSGTSIHGEHAPRGGNRQLKRAMFLSAFACMNADPASRTYYDRQRARGKTHTQALLRLARQRISVLFAMLRDGTFYEPRTPKN
VELAA
Blast result :
Comments
ISSgr1 is 96% aa similar to IS110.
References
1] Wendt-Pienkowski,E., Huang,Y., Zhang,J., Li,B., Jiang,H., Kwon,H., Hutchinson,C.R. and Shen,B. (2005) J. Am. Chem. Soc. 127 (47), 16442-16452 .