ISNme3
- Family IS1595
- Group IS1016
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EU164779 | ND | Neisseria meningitidis | Neisseria meningitidis W:2a:P1.7-2,4 ST-11 |
DNA section
IS Length : 745 bp
Ends
IR Length : 19
IRL : GGGGCTTAGGAAGCAAAATCATCAAAAAACCTGATAAGCTCCTAATATGA
IRR : GGGGCTTAGGAAGCAAAAATATTAAATTGGGTTATTTCGAAGCATCTTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAAATGAATTTTATAAA | TAACTTA | ATATCTAATATTT | 7 |
DNA sequence
GGGGCTTAGGAAGCAAAATCATCAAAAAACCTGATAAGCTCCTAATATGAAACTAAAAAATAAGTATCAAAAGTTCAGCAAAATTTCAGAGCAAAAGTTT
AGAGAAATAATCCGCTGTTTCGCTCTTGATTTGACCGCTTCCGATACTGCTAAAATGACCGGCATTAGTGTACGCGGTATCAATCCTATTTTCCTGAAAA
TCAGACACAGGATTGCTGCTCTGTGCGAACAAAGCTCACCACTGTCCGGTGTGGTCGAATTAGATGAATCTTACTTTGGTGCGCGACGTATCAGGGGTAA
GCGCGGTCGCGGAGCGTCAGGTAAAACCATCGTATTTGGCATACTGAAACGCAATGGCGTGGTCTATACGGAAATCGTTCCCGACGCTTCGAAAGCCTCA
CTAATCAAGGTCATACGTGGTCACATATCTGCTGACAGTGAAATCAATACTGACGGCTGGAAAGCATATGACGGTCTTGTCGATATGGGCTATGAGAAGC
ATTACCGTGTCCATCATGGTTCCAATGAGTTTGCTCGAGGAAAGCAACATATCAATGGTATTGAATCTTTTTGGAGTTATACTAAGGGGCGTTTGGCTAA
ATTTCATGGTATTTCCAAAGAGATGTTTTATCTGCATCTCAAAGAAACGGAGTTTAGGTTTAACCACCGGCATGAAGATTTAGGTAAAATATTAATGAAG
ATGCTTCGAAATAACCCAATTTAATATTTTTGCTTCCTAAGCCCC
AGAGAAATAATCCGCTGTTTCGCTCTTGATTTGACCGCTTCCGATACTGCTAAAATGACCGGCATTAGTGTACGCGGTATCAATCCTATTTTCCTGAAAA
TCAGACACAGGATTGCTGCTCTGTGCGAACAAAGCTCACCACTGTCCGGTGTGGTCGAATTAGATGAATCTTACTTTGGTGCGCGACGTATCAGGGGTAA
GCGCGGTCGCGGAGCGTCAGGTAAAACCATCGTATTTGGCATACTGAAACGCAATGGCGTGGTCTATACGGAAATCGTTCCCGACGCTTCGAAAGCCTCA
CTAATCAAGGTCATACGTGGTCACATATCTGCTGACAGTGAAATCAATACTGACGGCTGGAAAGCATATGACGGTCTTGTCGATATGGGCTATGAGAAGC
ATTACCGTGTCCATCATGGTTCCAATGAGTTTGCTCGAGGAAAGCAACATATCAATGGTATTGAATCTTTTTGGAGTTATACTAAGGGGCGTTTGGCTAA
ATTTCATGGTATTTCCAAAGAGATGTTTTATCTGCATCTCAAAGAAACGGAGTTTAGGTTTAACCACCGGCATGAAGATTTAGGTAAAATATTAATGAAG
ATGCTTCGAAATAACCCAATTTAATATTTTTGCTTCCTAAGCCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
678 bp | 225 aa | 47 | 724 | + | No |
Chemistry : DDE
ORF sequence :
MKLKNKYQKFSKISEQKFREIIRCFALDLTASDTAKMTGISVRGINPIFLKIRHRIAALCEQSSPLSGVVELDESYFGARRIRGKRGRGASGKTIVFGIL
KRNGVVYTEIVPDASKASLIKVIRGHISADSEINTDGWKAYDGLVDMGYEKHYRVHHGSNEFARGKQHINGIESFWSYTKGRLAKFHGISKEMFYLHLKE
TEFRFNHRHEDLGKILMKMLRNNPI
KRNGVVYTEIVPDASKASLIKVIRGHISADSEINTDGWKAYDGLVDMGYEKHYRVHHGSNEFARGKQHINGIESFWSYTKGRLAKFHGISKEMFYLHLKE
TEFRFNHRHEDLGKILMKMLRNNPI
Blast result :
Comments
ISNme3 is 96% aa similar to ISNme2.
References
1] Beddek,A.J., Jordan,T.W. and Martin,D.R.(20007) Direct submission GenBank.