ISBth6

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAJM01000806 ND Bacillus thuringiensis
Bacillus thuringiensis sv. israelensis ATCC 35646
DNA section
IS Length : 864 bp

Ends


IR Length : 17/18

IRL : GGTTCTGGTGCAAAAAATATAACACTTGTGCAATGAATCTGTAAATCTTG
IRR : GGTTCTGGTGCAAATAAAGGATACATTCAAAAAAACATTGATGATTCCTA

Insertion site


Left flankDirect repeatRight flankDR Length
ATGTATATGTAGGGAGTAAGGACAAATGTTCAGATTGTAAATGAATTATCATATAT0

DNA sequence

GGTTCTGGTGCAAAAAATATAACACTTGTGCAATGAATCTGTAAATCTTGGACATACTGATACTATTACTCTACAAAAGGGTGTGTGATCAGTATGAAAA
AGGAAACTTTGTTTAAATGGAAGCACTATCAGCCAGATATTATTCTATTAACTGTACGTTGGTACCTACGGTACAATCTTAGTTTTCGTGATTTGGTAGA
AATGATGGAGGAAAGAGGACTATCCTTGGCTCATACAACGATTATGCGGTGGGTCCATCAATATGGGCCGGAGTTAGATAAGCGAATTCGACGTCATCTC
AAACAAACGAATGACTCCTGGAGAGTAGATGAACGTACCATAAAAGTAAAGGAACAATGGATGTACTTATATCGTCCCGTGATTTCTGAAGGGAACACGA
TTGATTTGTATCTCAGTAAATCTAGAAATCATAAGGCTGCAAAGCGATTCTTCAAGAAGGCTTTGCGGTCTTTTCATGTTTCAAAACCTCGTGCAATTAC
AGTTGATAAAAATCCCGCCTATCCCATTGCTATCAGCGGGTTGAAGAAAGAGAAAAAAATGCCGTTAGGCATTCAAATCAGGCAGATAAAATATCTAAAT
AACATCGTAGAGCAAGACCATCGTTTCATTAAAAAACGTATACGCTCTATGTTAGGACTTAAATCTTTTCGCACAGCTACATTTATTCTTGCAGGAGTAG
AAGCCATGCATATGATACAAAAAGAACAGATTGATTTACGGGATCAGTCTGTTCAAAATCAAAAACAATTCATTCATCAATTATTTGGATTAACAGCGTA
AAGAACGATTCCGGTAGGAATCATCAATGTTTTTTTGAATGTATCCTTTATTTGCACCAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
717 bp238 aa85801+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MISMKKETLFKWKHYQPDIILLTVRWYLRYNLSFRDLVEMMEERGLSLAHTTIMRWVHQYGPELDKRIRRHLKQTNDSWRVDERTIKVKEQWMYLYRPVI
SEGNTIDLYLSKSRNHKAAKRFFKKALRSFHVSKPRAITVDKNPAYPIAISGLKKEKKMPLGIQIRQIKYLNNIVEQDHRFIKKRIRSMLGLKSFRTATF
ILAGVEAMHMIQKEQIDLRDQSVQNQKQFIHQLFGLTA

 

Blast result :
Comments
ISBth6 is 96% aa similar to IS240C.
References
1]Anderson,I., Sorokin,A., Kapatral,V., Reznik,G., Bhattacharya,A., Mikhailova,N., Burd,H., Joukov,V., Kaznadzey,D., Walunas,T., D'Souza,M., Larsen,N., Pusch,G., Liolios,K., Grechkin,Y., Lapidus,A., Goltsman,E., Chu,L., Fonstein,M., Ehrlich,D., Overbeek,R., Kyrpides,N. and Ivanova,N. (2005) Direct submission GenBank.

2] ISfinder annotation (2008).