ISBth6
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAJM01000806 | ND | Bacillus thuringiensis | Bacillus thuringiensis sv. israelensis ATCC 35646 |
DNA section
IS Length : 864 bp
Ends
IR Length : 17/18
IRL : GGTTCTGGTGCAAAAAATATAACACTTGTGCAATGAATCTGTAAATCTTG
IRR : GGTTCTGGTGCAAATAAAGGATACATTCAAAAAAACATTGATGATTCCTA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATGTATATGTAGGGAGTAAGGACAAAT | GTTCAGATTGTAAATGAATTATCATATAT | 0 |
DNA sequence
GGTTCTGGTGCAAAAAATATAACACTTGTGCAATGAATCTGTAAATCTTGGACATACTGATACTATTACTCTACAAAAGGGTGTGTGATCAGTATGAAAA
AGGAAACTTTGTTTAAATGGAAGCACTATCAGCCAGATATTATTCTATTAACTGTACGTTGGTACCTACGGTACAATCTTAGTTTTCGTGATTTGGTAGA
AATGATGGAGGAAAGAGGACTATCCTTGGCTCATACAACGATTATGCGGTGGGTCCATCAATATGGGCCGGAGTTAGATAAGCGAATTCGACGTCATCTC
AAACAAACGAATGACTCCTGGAGAGTAGATGAACGTACCATAAAAGTAAAGGAACAATGGATGTACTTATATCGTCCCGTGATTTCTGAAGGGAACACGA
TTGATTTGTATCTCAGTAAATCTAGAAATCATAAGGCTGCAAAGCGATTCTTCAAGAAGGCTTTGCGGTCTTTTCATGTTTCAAAACCTCGTGCAATTAC
AGTTGATAAAAATCCCGCCTATCCCATTGCTATCAGCGGGTTGAAGAAAGAGAAAAAAATGCCGTTAGGCATTCAAATCAGGCAGATAAAATATCTAAAT
AACATCGTAGAGCAAGACCATCGTTTCATTAAAAAACGTATACGCTCTATGTTAGGACTTAAATCTTTTCGCACAGCTACATTTATTCTTGCAGGAGTAG
AAGCCATGCATATGATACAAAAAGAACAGATTGATTTACGGGATCAGTCTGTTCAAAATCAAAAACAATTCATTCATCAATTATTTGGATTAACAGCGTA
AAGAACGATTCCGGTAGGAATCATCAATGTTTTTTTGAATGTATCCTTTATTTGCACCAGAACC
AGGAAACTTTGTTTAAATGGAAGCACTATCAGCCAGATATTATTCTATTAACTGTACGTTGGTACCTACGGTACAATCTTAGTTTTCGTGATTTGGTAGA
AATGATGGAGGAAAGAGGACTATCCTTGGCTCATACAACGATTATGCGGTGGGTCCATCAATATGGGCCGGAGTTAGATAAGCGAATTCGACGTCATCTC
AAACAAACGAATGACTCCTGGAGAGTAGATGAACGTACCATAAAAGTAAAGGAACAATGGATGTACTTATATCGTCCCGTGATTTCTGAAGGGAACACGA
TTGATTTGTATCTCAGTAAATCTAGAAATCATAAGGCTGCAAAGCGATTCTTCAAGAAGGCTTTGCGGTCTTTTCATGTTTCAAAACCTCGTGCAATTAC
AGTTGATAAAAATCCCGCCTATCCCATTGCTATCAGCGGGTTGAAGAAAGAGAAAAAAATGCCGTTAGGCATTCAAATCAGGCAGATAAAATATCTAAAT
AACATCGTAGAGCAAGACCATCGTTTCATTAAAAAACGTATACGCTCTATGTTAGGACTTAAATCTTTTCGCACAGCTACATTTATTCTTGCAGGAGTAG
AAGCCATGCATATGATACAAAAAGAACAGATTGATTTACGGGATCAGTCTGTTCAAAATCAAAAACAATTCATTCATCAATTATTTGGATTAACAGCGTA
AAGAACGATTCCGGTAGGAATCATCAATGTTTTTTTGAATGTATCCTTTATTTGCACCAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
717 bp | 238 aa | 85 | 801 | + | No |
Chemistry : DDE
ORF sequence :
MISMKKETLFKWKHYQPDIILLTVRWYLRYNLSFRDLVEMMEERGLSLAHTTIMRWVHQYGPELDKRIRRHLKQTNDSWRVDERTIKVKEQWMYLYRPVI
SEGNTIDLYLSKSRNHKAAKRFFKKALRSFHVSKPRAITVDKNPAYPIAISGLKKEKKMPLGIQIRQIKYLNNIVEQDHRFIKKRIRSMLGLKSFRTATF
ILAGVEAMHMIQKEQIDLRDQSVQNQKQFIHQLFGLTA
SEGNTIDLYLSKSRNHKAAKRFFKKALRSFHVSKPRAITVDKNPAYPIAISGLKKEKKMPLGIQIRQIKYLNNIVEQDHRFIKKRIRSMLGLKSFRTATF
ILAGVEAMHMIQKEQIDLRDQSVQNQKQFIHQLFGLTA
Blast result :
Comments
ISBth6 is 96% aa similar to IS240C.
References
1]Anderson,I., Sorokin,A., Kapatral,V., Reznik,G., Bhattacharya,A., Mikhailova,N., Burd,H., Joukov,V., Kaznadzey,D., Walunas,T., D'Souza,M., Larsen,N., Pusch,G., Liolios,K., Grechkin,Y., Lapidus,A., Goltsman,E., Chu,L., Fonstein,M., Ehrlich,D., Overbeek,R., Kyrpides,N. and Ivanova,N. (2005) Direct submission GenBank.
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).