ISSus3

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008536 ND Solibacter usitatus
Solibacter usitatus Ellin6076
DNA section
IS Length : 823 bp

Ends


IR Length : 18/20

IRL : GGTTCTGTTGCAAACGGGTTGATCTGATCTGGTACGGTATATCGTGACTC
IRR : GGTTCTGTTGCAAATACGGGACACGGAGTAGAGTGGTGTGACGAGCATGT

Insertion site


Left flankDirect repeatRight flankDR Length
ACGATGGCCAAGGAAGACCGCTAGTCGATCCAGGCGTTGCCCTTGCCCCCTCCCCTG0

DNA sequence

GGTTCTGTTGCAAACGGGTTGATCTGATCTGGTACGGTATATCGTGACTCGAAAACGGCCAGCACTATTCCGTGGGCGGCACTTCGAAGACGTGATCATC
CTGCTATGCGTTCGCTGGTATTTGCGATACTCGCTCAGCTATCGCGACCTGCAAGAAATGATGGCGGAACGAGGCCTGTCCGTGGACCATGTCACGATCT
GGCGGTGGGTCCAACGCTATGCGCCCGTTTTGAATCAACGAATTCGCCGTGAGCTGCGGCGCCCGAATCGATCCTGGAGGGTCGACGAAACGTACGTCAA
GGTTGCCGGTGATTGGGCCTACCTCTATCGTGCCGTTGATTCTGCCGGCGAGACCATTGAGTTTATGTTGTCGCCGAAGCGCGACCTGATCGCAGCGAAG
CTGTTCCTACGCCTGGCTCTGTCCGGCGGTGGGCCCCCACCACGGGTCATCAACGTCGATGGGCATCCAGCATACGCCAGTGCGATCGCCGAGCTGAAGG
ATTCCGGAGAACTTGGCCGGCGTTGTCGTTGTCGAACATCGCCTTACATGAACAACATCATCGAGCAAGATCATCGATTCATCAAGAAGCGGATCACGGC
CAGCCTCGGATTCCGTTCGGCGGAGGGAGCGTGTCGAACGATCGAGGGTTACGAGGCGATGCATGCAATCCGAAAAGGGCAGATCCGCTGGGTGGCGAAG
GGTGATCCTGTCGGTCAACGTCAGTTCATCCATTGCATTTTCGGAGTCACTGCGTAGCTCTTCCCTTGAGACCACATGCTCGTCACACCACTCTACTCCG
TGTCCCGTATTTGCAACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
714 bp237 aa44757+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTRKRPALFRGRHFEDVIILLCVRWYLRYSLSYRDLQEMMAERGLSVDHVTIWRWVQRYAPVLNQRIRRELRRPNRSWRVDETYVKVAGDWAYLYRAVDS
AGETIEFMLSPKRDLIAAKLFLRLALSGGGPPPRVINVDGHPAYASAIAELKDSGELGRRCRCRTSPYMNNIIEQDHRFIKKRITASLGFRSAEGACRTI
EGYEAMHAIRKGQIRWVAKGDPVGQRQFIHCIFGVTA

 

Blast result :
Comments
ISSus3 is 69% aa similar to IS240A.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P. (2006) Direct Submission GenBank.