ISSus3
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008536 | ND | Solibacter usitatus | Solibacter usitatus Ellin6076 |
DNA section
IS Length : 823 bp
Ends
IR Length : 18/20
IRL : GGTTCTGTTGCAAACGGGTTGATCTGATCTGGTACGGTATATCGTGACTC
IRR : GGTTCTGTTGCAAATACGGGACACGGAGTAGAGTGGTGTGACGAGCATGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACGATGGCCAAGGAAGACCGCTAGTCGATCC | AGGCGTTGCCCTTGCCCCCTCCCCTG | 0 |
DNA sequence
GGTTCTGTTGCAAACGGGTTGATCTGATCTGGTACGGTATATCGTGACTCGAAAACGGCCAGCACTATTCCGTGGGCGGCACTTCGAAGACGTGATCATC
CTGCTATGCGTTCGCTGGTATTTGCGATACTCGCTCAGCTATCGCGACCTGCAAGAAATGATGGCGGAACGAGGCCTGTCCGTGGACCATGTCACGATCT
GGCGGTGGGTCCAACGCTATGCGCCCGTTTTGAATCAACGAATTCGCCGTGAGCTGCGGCGCCCGAATCGATCCTGGAGGGTCGACGAAACGTACGTCAA
GGTTGCCGGTGATTGGGCCTACCTCTATCGTGCCGTTGATTCTGCCGGCGAGACCATTGAGTTTATGTTGTCGCCGAAGCGCGACCTGATCGCAGCGAAG
CTGTTCCTACGCCTGGCTCTGTCCGGCGGTGGGCCCCCACCACGGGTCATCAACGTCGATGGGCATCCAGCATACGCCAGTGCGATCGCCGAGCTGAAGG
ATTCCGGAGAACTTGGCCGGCGTTGTCGTTGTCGAACATCGCCTTACATGAACAACATCATCGAGCAAGATCATCGATTCATCAAGAAGCGGATCACGGC
CAGCCTCGGATTCCGTTCGGCGGAGGGAGCGTGTCGAACGATCGAGGGTTACGAGGCGATGCATGCAATCCGAAAAGGGCAGATCCGCTGGGTGGCGAAG
GGTGATCCTGTCGGTCAACGTCAGTTCATCCATTGCATTTTCGGAGTCACTGCGTAGCTCTTCCCTTGAGACCACATGCTCGTCACACCACTCTACTCCG
TGTCCCGTATTTGCAACAGAACC
CTGCTATGCGTTCGCTGGTATTTGCGATACTCGCTCAGCTATCGCGACCTGCAAGAAATGATGGCGGAACGAGGCCTGTCCGTGGACCATGTCACGATCT
GGCGGTGGGTCCAACGCTATGCGCCCGTTTTGAATCAACGAATTCGCCGTGAGCTGCGGCGCCCGAATCGATCCTGGAGGGTCGACGAAACGTACGTCAA
GGTTGCCGGTGATTGGGCCTACCTCTATCGTGCCGTTGATTCTGCCGGCGAGACCATTGAGTTTATGTTGTCGCCGAAGCGCGACCTGATCGCAGCGAAG
CTGTTCCTACGCCTGGCTCTGTCCGGCGGTGGGCCCCCACCACGGGTCATCAACGTCGATGGGCATCCAGCATACGCCAGTGCGATCGCCGAGCTGAAGG
ATTCCGGAGAACTTGGCCGGCGTTGTCGTTGTCGAACATCGCCTTACATGAACAACATCATCGAGCAAGATCATCGATTCATCAAGAAGCGGATCACGGC
CAGCCTCGGATTCCGTTCGGCGGAGGGAGCGTGTCGAACGATCGAGGGTTACGAGGCGATGCATGCAATCCGAAAAGGGCAGATCCGCTGGGTGGCGAAG
GGTGATCCTGTCGGTCAACGTCAGTTCATCCATTGCATTTTCGGAGTCACTGCGTAGCTCTTCCCTTGAGACCACATGCTCGTCACACCACTCTACTCCG
TGTCCCGTATTTGCAACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
714 bp | 237 aa | 44 | 757 | + | No |
Chemistry : DDE
ORF sequence :
MTRKRPALFRGRHFEDVIILLCVRWYLRYSLSYRDLQEMMAERGLSVDHVTIWRWVQRYAPVLNQRIRRELRRPNRSWRVDETYVKVAGDWAYLYRAVDS
AGETIEFMLSPKRDLIAAKLFLRLALSGGGPPPRVINVDGHPAYASAIAELKDSGELGRRCRCRTSPYMNNIIEQDHRFIKKRITASLGFRSAEGACRTI
EGYEAMHAIRKGQIRWVAKGDPVGQRQFIHCIFGVTA
AGETIEFMLSPKRDLIAAKLFLRLALSGGGPPPRVINVDGHPAYASAIAELKDSGELGRRCRCRTSPYMNNIIEQDHRFIKKRITASLGFRSAEGACRTI
EGYEAMHAIRKGQIRWVAKGDPVGQRQFIHCIFGVTA
Blast result :
Comments
ISSus3 is 69% aa similar to IS240A.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Thompson,L.S., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Janssen,P.H., Kuske,C.R. and Richardson,P. (2006) Direct Submission GenBank.