ISSmu2

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_004350 ND Streptococcus mutans
Streptococcus mutans UA159
DNA section
IS Length : 1411 bp

Ends


IR Length : 19/25

IRL : GGCTCTATAATTTCTGTAGTGGGTAAAACCACTGTAGAGATTATAGAGCT
IRR : GGCTCTTTGTCAACTGTAGTGGGTGACGAAAAGCTAACATCTAGAGAGGA

Insertion site


Left flankDirect repeatRight flankDR Length
GTAAAATATAGTGCAACAAAA/TAAACTCATAGAGTTCCAAAA8

DNA sequence

GGCTCTATAATTTCTGTAGTGGGTAAAACCACTGTAGAGATTATAGAGCTTTTTGAGTGTACACAAAAATCCCATAAGAACTATAATGAAAAGCGACCAA
ACCATCATTAGGAAGAACTTATGAGACTTATTAAGAATACCACAGAATTAATCGGAATTAAAGACCCAAATATCATTATTTTTCTTGTTTTTGAAACTGA
TACTCATATCGAGAGTCAAGCAAAACGCAATTATCCTGCACCATCATGCCCTCATTGCCAAGGAAAGATGATCAAATACGACTTTCAAAGACCTTCTAAA
ATTCCTCTTCTCGAGCAAGCTGGAACTCCAACACTACTACGTCTTAAGAAGCGTCGTTTCCAGTGTAAAGGGTGTAAGAGAGTAATGGTGGCTGAGACAT
CAATCGTTGAGAAAAACTGCCAAATCTCAAATCTTGTCCGACAAAAAGTTGCACAACGCCTAACTGAGAAGGTATCACTAACTGATATTGCCAGAAGACT
TCGTGTGTCAACGTCCACTGTCTATCGTAAACTTGACCAGTTTACCTTCAAGGAACATTATGACAGACTCCCAAGGGTTATGTCCTGGGATGAAGTTGGT
TTCAAGAAAGGTGAGTTGGCTTTTGTAGCTCAGAATTATGAGACAAACGAACTCATAACTATCCTTGATAATCGTCGTCAAACAACCATCCGTAATTACT
TTTTGAAGTATCCATTAAAAGTTCGACAAGAGGTTCGATTTATCACAATGGATATGTCTGGGGCTTATATTCCAATGGCTCGCAAACTCTTTCCAAACGC
CAAAATCGTTCTTGACAGATTTCACATTATCCAGCACCTTGGACGTGCCTTTTTAAAGACAAGAATTGCAATTATGAACCAGTTTGATAAGAAGTCGCTA
CCCTATCGAGCCTTGAAAAATCACTGGCGACTCTTTCAAAAGGACAGCCGTAAGTTATCTCTCAACTCTTTTTATTCAAAGACCTTCCGTCAAACCTTAA
GTCCACATGAAGTCGTTGAGAAGACACTAGACTTTTCAGAAGAGCTTACCGACTACTATACTCTTTACCAGCTTTTACTTTTTCACTTTCAAGAGAAGAG
AGCGGAGGAGTTTTTCGAACTCATAGAAGAAAATATGAGCAAGGTCAATCATTACTTTCAAATTATCTTTAGGACCTTTCTTAAACACAAACAATACATC
AAAAACGCACTAGAAACGGACTATTCAAACGCAAAACTTGAAGCTACTAACAAGTTGATTAAAGACATCAAACGTTTGGGATTTGGTTTTAGAAACTTTA
TCAACTTTAGAAAGCGTGTGTTCATCACCCTGAACATCCAAAAAAAAGAAGATCTATCCGGTCCTCTCTAGATGTTAGCTTTTCGTCACCCACTACAGTT
GACAAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1251 bp416 aa1211371+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MRLIKNTTELIGIKDPNIIIFLVFETDTHIESQAKRNYPAPSCPHCQGKMIKYDFQRPSKIPLLEQAGTPTLLRLKKRRFQCKGCKRVMVAETSIVEKNC
QISNLVRQKVAQRLTEKVSLTDIARRLRVSTSTVYRKLDQFTFKEHYDRLPRVMSWDEVGFKKGELAFVAQNYETNELITILDNRRQTTIRNYFLKYPLK
VRQEVRFITMDMSGAYIPMARKLFPNAKIVLDRFHIIQHLGRAFLKTRIAIMNQFDKKSLPYRALKNHWRLFQKDSRKLSLNSFYSKTFRQTLSPHEVVE
KTLDFSEELTDYYTLYQLLLFHFQEKRAEEFFELIEENMSKVNHYFQIIFRTFLKHKQYIKNALETDYSNAKLEATNKLIKDIKRLGFGFRNFINFRKRV
FITLNIQKKEDLSGPL

 

Blast result :
Comments
ISSmu2 is 94% aa similar to IS1193D.
References
1] Ajdic,D., McShan,W.M., McLaughlin,R.E., Savic,G., Chang,J., Carson,M.B., Primeaux,C., Tian,R., Kenton,S., Jia,H., Lin,S., Qian,Y., Li,S., Zhu,H., Najar,F., Lai,H., White,J., Roe,B.A. and Ferretti,J.J. (2002) Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14434-14439