ISSmu2
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004350 | ND | Streptococcus mutans | Streptococcus mutans UA159 |
DNA section
IS Length : 1411 bp
Ends
IR Length : 19/25
IRL : GGCTCTATAATTTCTGTAGTGGGTAAAACCACTGTAGAGATTATAGAGCT
IRR : GGCTCTTTGTCAACTGTAGTGGGTGACGAAAAGCTAACATCTAGAGAGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTAAAATATAGTGCAACAAA | A/TAAACTCA | TAGAGTTCCAAAA | 8 |
DNA sequence
GGCTCTATAATTTCTGTAGTGGGTAAAACCACTGTAGAGATTATAGAGCTTTTTGAGTGTACACAAAAATCCCATAAGAACTATAATGAAAAGCGACCAA
ACCATCATTAGGAAGAACTTATGAGACTTATTAAGAATACCACAGAATTAATCGGAATTAAAGACCCAAATATCATTATTTTTCTTGTTTTTGAAACTGA
TACTCATATCGAGAGTCAAGCAAAACGCAATTATCCTGCACCATCATGCCCTCATTGCCAAGGAAAGATGATCAAATACGACTTTCAAAGACCTTCTAAA
ATTCCTCTTCTCGAGCAAGCTGGAACTCCAACACTACTACGTCTTAAGAAGCGTCGTTTCCAGTGTAAAGGGTGTAAGAGAGTAATGGTGGCTGAGACAT
CAATCGTTGAGAAAAACTGCCAAATCTCAAATCTTGTCCGACAAAAAGTTGCACAACGCCTAACTGAGAAGGTATCACTAACTGATATTGCCAGAAGACT
TCGTGTGTCAACGTCCACTGTCTATCGTAAACTTGACCAGTTTACCTTCAAGGAACATTATGACAGACTCCCAAGGGTTATGTCCTGGGATGAAGTTGGT
TTCAAGAAAGGTGAGTTGGCTTTTGTAGCTCAGAATTATGAGACAAACGAACTCATAACTATCCTTGATAATCGTCGTCAAACAACCATCCGTAATTACT
TTTTGAAGTATCCATTAAAAGTTCGACAAGAGGTTCGATTTATCACAATGGATATGTCTGGGGCTTATATTCCAATGGCTCGCAAACTCTTTCCAAACGC
CAAAATCGTTCTTGACAGATTTCACATTATCCAGCACCTTGGACGTGCCTTTTTAAAGACAAGAATTGCAATTATGAACCAGTTTGATAAGAAGTCGCTA
CCCTATCGAGCCTTGAAAAATCACTGGCGACTCTTTCAAAAGGACAGCCGTAAGTTATCTCTCAACTCTTTTTATTCAAAGACCTTCCGTCAAACCTTAA
GTCCACATGAAGTCGTTGAGAAGACACTAGACTTTTCAGAAGAGCTTACCGACTACTATACTCTTTACCAGCTTTTACTTTTTCACTTTCAAGAGAAGAG
AGCGGAGGAGTTTTTCGAACTCATAGAAGAAAATATGAGCAAGGTCAATCATTACTTTCAAATTATCTTTAGGACCTTTCTTAAACACAAACAATACATC
AAAAACGCACTAGAAACGGACTATTCAAACGCAAAACTTGAAGCTACTAACAAGTTGATTAAAGACATCAAACGTTTGGGATTTGGTTTTAGAAACTTTA
TCAACTTTAGAAAGCGTGTGTTCATCACCCTGAACATCCAAAAAAAAGAAGATCTATCCGGTCCTCTCTAGATGTTAGCTTTTCGTCACCCACTACAGTT
GACAAAGAGCC
ACCATCATTAGGAAGAACTTATGAGACTTATTAAGAATACCACAGAATTAATCGGAATTAAAGACCCAAATATCATTATTTTTCTTGTTTTTGAAACTGA
TACTCATATCGAGAGTCAAGCAAAACGCAATTATCCTGCACCATCATGCCCTCATTGCCAAGGAAAGATGATCAAATACGACTTTCAAAGACCTTCTAAA
ATTCCTCTTCTCGAGCAAGCTGGAACTCCAACACTACTACGTCTTAAGAAGCGTCGTTTCCAGTGTAAAGGGTGTAAGAGAGTAATGGTGGCTGAGACAT
CAATCGTTGAGAAAAACTGCCAAATCTCAAATCTTGTCCGACAAAAAGTTGCACAACGCCTAACTGAGAAGGTATCACTAACTGATATTGCCAGAAGACT
TCGTGTGTCAACGTCCACTGTCTATCGTAAACTTGACCAGTTTACCTTCAAGGAACATTATGACAGACTCCCAAGGGTTATGTCCTGGGATGAAGTTGGT
TTCAAGAAAGGTGAGTTGGCTTTTGTAGCTCAGAATTATGAGACAAACGAACTCATAACTATCCTTGATAATCGTCGTCAAACAACCATCCGTAATTACT
TTTTGAAGTATCCATTAAAAGTTCGACAAGAGGTTCGATTTATCACAATGGATATGTCTGGGGCTTATATTCCAATGGCTCGCAAACTCTTTCCAAACGC
CAAAATCGTTCTTGACAGATTTCACATTATCCAGCACCTTGGACGTGCCTTTTTAAAGACAAGAATTGCAATTATGAACCAGTTTGATAAGAAGTCGCTA
CCCTATCGAGCCTTGAAAAATCACTGGCGACTCTTTCAAAAGGACAGCCGTAAGTTATCTCTCAACTCTTTTTATTCAAAGACCTTCCGTCAAACCTTAA
GTCCACATGAAGTCGTTGAGAAGACACTAGACTTTTCAGAAGAGCTTACCGACTACTATACTCTTTACCAGCTTTTACTTTTTCACTTTCAAGAGAAGAG
AGCGGAGGAGTTTTTCGAACTCATAGAAGAAAATATGAGCAAGGTCAATCATTACTTTCAAATTATCTTTAGGACCTTTCTTAAACACAAACAATACATC
AAAAACGCACTAGAAACGGACTATTCAAACGCAAAACTTGAAGCTACTAACAAGTTGATTAAAGACATCAAACGTTTGGGATTTGGTTTTAGAAACTTTA
TCAACTTTAGAAAGCGTGTGTTCATCACCCTGAACATCCAAAAAAAAGAAGATCTATCCGGTCCTCTCTAGATGTTAGCTTTTCGTCACCCACTACAGTT
GACAAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 121 | 1371 | + | No |
Chemistry : Unknow
ORF sequence :
MRLIKNTTELIGIKDPNIIIFLVFETDTHIESQAKRNYPAPSCPHCQGKMIKYDFQRPSKIPLLEQAGTPTLLRLKKRRFQCKGCKRVMVAETSIVEKNC
QISNLVRQKVAQRLTEKVSLTDIARRLRVSTSTVYRKLDQFTFKEHYDRLPRVMSWDEVGFKKGELAFVAQNYETNELITILDNRRQTTIRNYFLKYPLK
VRQEVRFITMDMSGAYIPMARKLFPNAKIVLDRFHIIQHLGRAFLKTRIAIMNQFDKKSLPYRALKNHWRLFQKDSRKLSLNSFYSKTFRQTLSPHEVVE
KTLDFSEELTDYYTLYQLLLFHFQEKRAEEFFELIEENMSKVNHYFQIIFRTFLKHKQYIKNALETDYSNAKLEATNKLIKDIKRLGFGFRNFINFRKRV
FITLNIQKKEDLSGPL
QISNLVRQKVAQRLTEKVSLTDIARRLRVSTSTVYRKLDQFTFKEHYDRLPRVMSWDEVGFKKGELAFVAQNYETNELITILDNRRQTTIRNYFLKYPLK
VRQEVRFITMDMSGAYIPMARKLFPNAKIVLDRFHIIQHLGRAFLKTRIAIMNQFDKKSLPYRALKNHWRLFQKDSRKLSLNSFYSKTFRQTLSPHEVVE
KTLDFSEELTDYYTLYQLLLFHFQEKRAEEFFELIEENMSKVNHYFQIIFRTFLKHKQYIKNALETDYSNAKLEATNKLIKDIKRLGFGFRNFINFRKRV
FITLNIQKKEDLSGPL
Blast result :
Comments
ISSmu2 is 94% aa similar to IS1193D.
References
1] Ajdic,D., McShan,W.M., McLaughlin,R.E., Savic,G., Chang,J., Carson,M.B., Primeaux,C., Tian,R., Kenton,S., Jia,H., Lin,S., Qian,Y., Li,S., Zhu,H., Najar,F., Lai,H., White,J., Roe,B.A. and Ferretti,J.J. (2002) Proc. Natl. Acad. Sci. U.S.A. 99 (22), 14434-14439