ISMtsp1

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABAY01000077 ND Methylobacterium sp.
Methylobacterium sp. 4-46 ctg483
DNA section
IS Length : 893 bp

Ends


IR Length : 15

IRL : GGGCCTGTCGCAAACGCGAACGGGCTCGCGTTCATGGGTCGTTAGCCATA
IRR : GGGCCTGTCGCAAACTGGGGTCCAGGCCGCAGAAGGGTCTCTGCCGTCCC

Insertion site


Left flankDirect repeatRight flankDR Length
AGGTCGCCATGCTGTTACGCGTGATCCAGGGGCGTAGCGCAGGTACCAGGAGACGGC0

DNA sequence

GGGCCTGTCGCAAACGCGAACGGGCTCGCGTTCATGGGTCGTTAGCCATACCCGCCCAGCTTGCCGCTCCGCCTCGGAGCCGGCCCATGATCCTGAACGC
CCTCGCCCTCAAGCTGAAGAGAGAGGCCCGCGGCGACTTCACGGGCCGGCACTTCGAAGCCACTCTCATCGTCCAGGCCGTCTCCTGGTACCTGCGCTAC
GCGCTCAGCTACCGCGACATCGAGGAGATGCTGCTGGAGCGGGGTATGGGGGTGGACCACTCCACCATCAACCGCTGGGTGCTGGCCTACGCGCCCGCCA
TCGAGCGGCGCCTGCGCCGGTTCCGCAAGCCGCATTGCGGGTCCGTGAGGGTGGACGAGACCTATATCAAGGTGCGTGGCCAGTGGCGCTATCTGTACCG
GGCCATCGACAAGCATGGCGAGGCGGTCGACTTCCTGCTCACCGCCAACCGCGACCTGGAAGCGGCCAAGCGCTTCTTCCGCAAGATGCTACAGGATCAG
CCGCTTCTCGCGCCCGACCGCATCGGCACCGATGGTGCTGGCCCTTACCCGCCGGCGATCGCCGAGAGCCGCAAGGAGGGCCTGCTGCCACGCGCGCCCA
TCCACCACGTCACCAAGCACTTGCAGCAAGGGATTGAGAGCGACCACTTCCGGGTCAAGCGGCCGATGCCACGGGTCGGGGGCTTCCGCGCGTTCCACAC
GGCGCGGCGGACGATCCAGGGCTTCGAGGCCATGCTTTGGCTGCGCAAGGGTTTCGGGTTCTCAGGGGCGTGGACGGTCCGGGAGCAGAACCGACTGCTC
GCGCAGTGCTTCGGACTTCCCGTGGCGAACAAAGCGTGAAAGCGGGACGGCAGAGACCCTTCTGCGGCCTGGACCCCAGTTTGCGACAGGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
753 bp250 aa87839+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MILNALALKLKREARGDFTGRHFEATLIVQAVSWYLRYALSYRDIEEMLLERGMGVDHSTINRWVLAYAPAIERRLRRFRKPHCGSVRVDETYIKVRGQW
RYLYRAIDKHGEAVDFLLTANRDLEAAKRFFRKMLQDQPLLAPDRIGTDGAGPYPPAIAESRKEGLLPRAPIHHVTKHLQQGIESDHFRVKRPMPRVGGF
RAFHTARRTIQGFEAMLWLRKGFGFSGAWTVREQNRLLAQCFGLPVANKA

 

Blast result :
Comments
ISMtsp1 is 86% similar to ISRle39B.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Marx,C.J. and Richardson,P. (2007) Direct Submission GenBank