ISHwa1
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM180088 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi DSM 16790 |
DNA section
IS Length : 937 bp
Ends
IR Length : 14/16
IRL : GGCTCTGGTGAATCGCTGGACAGCATCGGTTTCGACCGTCAGAACTAGTG
IRR : GGCCGTGGTGAATCGCCAGACGTAGCGTAATTTCACGGTTTTACCGCCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAGGCTTAG | CTTATAGT | GAGTGATTGA | 8 |
DNA sequence
GGCTCTGGTGAATCGCTGGACAGCATCGGTTTCGACCGTCAGAACTAGTGGAATGAAGCGGGAAATCGCCGATGTCTATGTCGAAGATCTCCCGCTTCAC
GAAGAAAGCGGTTCAGTTAGCTAAAAATGCTGTTGGTGACCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGACTACGCTGTCGTATCA
CTCCATTGTCTTCGAGTTTACTTGGAAAAGTCCTACCGTGAGACGTTAGATCTGTTGAGCGAGATGCCACATATTCTCGGGGAGATCGGGCTTGAACCAG
CTGATCTCCCGCATCACTCGACGCTAGTGAAGTGGTTTGACAGGATCAAGACAGCACTCTGGCGAGTGCTGCTGCGCCTCTCGGCGCAGCTGCACGACCC
GAGCGGTCACGCCGTGATCGATGCGACGTTTTTCGACCGCGAAAACGCCAGCAAACACTACTGTCGTCGGACGAATTACCGTGTTCAGACGCTCAAAACA
ACTACTCTCGTGGACACAGAAAGCCAAGCCATTCTGGACGTTCACTGTACGACCGAGAAGCGTCACGACACACAACTCGGCTGGCAGGTCGCCCGCCGCA
ACGCGGGCGACCTCACCAGCCTCGCTGCGGACAAAGGCTACGATTGGATGGAGTTACGCGAGAAACTACGCGAAGACGGCGTGAGACCGTTGATCAAGCA
TCGTGAGTTCCGGCCTATCGATCACGCGCATAACGCGCGGATCGATGGACCTCAATACCGTCAACGAGCGATGTGTGAGACAGTCTTCTCGACGATCAAG
CGCACGCTCGGCGACGCCGTGCGTGCGCGATCTTGGTACGGCGAATTTCGTGAACTCGTCCTGATGTGTGCGGTTCACAACATTAAGCAGGCGGTAAAAC
CGTGAAATTACGCTACGTCTGGCGATTCACCACGGCC
GAAGAAAGCGGTTCAGTTAGCTAAAAATGCTGTTGGTGACCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGACTACGCTGTCGTATCA
CTCCATTGTCTTCGAGTTTACTTGGAAAAGTCCTACCGTGAGACGTTAGATCTGTTGAGCGAGATGCCACATATTCTCGGGGAGATCGGGCTTGAACCAG
CTGATCTCCCGCATCACTCGACGCTAGTGAAGTGGTTTGACAGGATCAAGACAGCACTCTGGCGAGTGCTGCTGCGCCTCTCGGCGCAGCTGCACGACCC
GAGCGGTCACGCCGTGATCGATGCGACGTTTTTCGACCGCGAAAACGCCAGCAAACACTACTGTCGTCGGACGAATTACCGTGTTCAGACGCTCAAAACA
ACTACTCTCGTGGACACAGAAAGCCAAGCCATTCTGGACGTTCACTGTACGACCGAGAAGCGTCACGACACACAACTCGGCTGGCAGGTCGCCCGCCGCA
ACGCGGGCGACCTCACCAGCCTCGCTGCGGACAAAGGCTACGATTGGATGGAGTTACGCGAGAAACTACGCGAAGACGGCGTGAGACCGTTGATCAAGCA
TCGTGAGTTCCGGCCTATCGATCACGCGCATAACGCGCGGATCGATGGACCTCAATACCGTCAACGAGCGATGTGTGAGACAGTCTTCTCGACGATCAAG
CGCACGCTCGGCGACGCCGTGCGTGCGCGATCTTGGTACGGCGAATTTCGTGAACTCGTCCTGATGTGTGCGGTTCACAACATTAAGCAGGCGGTAAAAC
CGTGAAATTACGCTACGTCTGGCGATTCACCACGGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
828 bp | 275 aa | 78 | 905 | + | No |
Chemistry : DDE
ORF sequence :
MSKISRFTKKAVQLAKNAVGDRGEVAAPEGGGGFADYAVVSLHCLRVYLEKSYRETLDLLSEMPHILGEIGLEPADLPHHSTLVKWFDRIKTALWRVLLR
LSAQLHDPSGHAVIDATFFDRENASKHYCRRTNYRVQTLKTTTLVDTESQAILDVHCTTEKRHDTQLGWQVARRNAGDLTSLAADKGYDWMELREKLRED
GVRPLIKHREFRPIDHAHNARIDGPQYRQRAMCETVFSTIKRTLGDAVRARSWYGEFRELVLMCAVHNIKQAVKP
LSAQLHDPSGHAVIDATFFDRENASKHYCRRTNYRVQTLKTTTLVDTESQAILDVHCTTEKRHDTQLGWQVARRNAGDLTSLAADKGYDWMELREKLRED
GVRPLIKHREFRPIDHAHNARIDGPQYRQRAMCETVFSTIKRTLGDAVRARSWYGEFRELVLMCAVHNIKQAVKP
Blast result :
Comments
ISHwa1 is 94% aa similar to ISHma8.
References
1] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M., Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169.
2] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968
2] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968