ISHwa1

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM180088 ND Haloquadratum walsbyi
Haloquadratum walsbyi DSM 16790
DNA section
IS Length : 937 bp

Ends


IR Length : 14/16

IRL : GGCTCTGGTGAATCGCTGGACAGCATCGGTTTCGACCGTCAGAACTAGTG
IRR : GGCCGTGGTGAATCGCCAGACGTAGCGTAATTTCACGGTTTTACCGCCTG

Insertion site


Left flankDirect repeatRight flankDR Length
AGAGGCTTAGCTTATAGTGAGTGATTGA8

DNA sequence

GGCTCTGGTGAATCGCTGGACAGCATCGGTTTCGACCGTCAGAACTAGTGGAATGAAGCGGGAAATCGCCGATGTCTATGTCGAAGATCTCCCGCTTCAC
GAAGAAAGCGGTTCAGTTAGCTAAAAATGCTGTTGGTGACCGAGGCGAAGTCGCCGCCCCCGAAGGGGGTGGCGGCTTCGCCGACTACGCTGTCGTATCA
CTCCATTGTCTTCGAGTTTACTTGGAAAAGTCCTACCGTGAGACGTTAGATCTGTTGAGCGAGATGCCACATATTCTCGGGGAGATCGGGCTTGAACCAG
CTGATCTCCCGCATCACTCGACGCTAGTGAAGTGGTTTGACAGGATCAAGACAGCACTCTGGCGAGTGCTGCTGCGCCTCTCGGCGCAGCTGCACGACCC
GAGCGGTCACGCCGTGATCGATGCGACGTTTTTCGACCGCGAAAACGCCAGCAAACACTACTGTCGTCGGACGAATTACCGTGTTCAGACGCTCAAAACA
ACTACTCTCGTGGACACAGAAAGCCAAGCCATTCTGGACGTTCACTGTACGACCGAGAAGCGTCACGACACACAACTCGGCTGGCAGGTCGCCCGCCGCA
ACGCGGGCGACCTCACCAGCCTCGCTGCGGACAAAGGCTACGATTGGATGGAGTTACGCGAGAAACTACGCGAAGACGGCGTGAGACCGTTGATCAAGCA
TCGTGAGTTCCGGCCTATCGATCACGCGCATAACGCGCGGATCGATGGACCTCAATACCGTCAACGAGCGATGTGTGAGACAGTCTTCTCGACGATCAAG
CGCACGCTCGGCGACGCCGTGCGTGCGCGATCTTGGTACGGCGAATTTCGTGAACTCGTCCTGATGTGTGCGGTTCACAACATTAAGCAGGCGGTAAAAC
CGTGAAATTACGCTACGTCTGGCGATTCACCACGGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
828 bp275 aa78905+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKISRFTKKAVQLAKNAVGDRGEVAAPEGGGGFADYAVVSLHCLRVYLEKSYRETLDLLSEMPHILGEIGLEPADLPHHSTLVKWFDRIKTALWRVLLR
LSAQLHDPSGHAVIDATFFDRENASKHYCRRTNYRVQTLKTTTLVDTESQAILDVHCTTEKRHDTQLGWQVARRNAGDLTSLAADKGYDWMELREKLRED
GVRPLIKHREFRPIDHAHNARIDGPQYRQRAMCETVFSTIKRTLGDAVRARSWYGEFRELVLMCAVHNIKQAVKP

 

Blast result :
Comments
ISHwa1 is 94% aa similar to ISHma8.
References
1] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M., Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169.
2] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968