ISVsa9
- Family IS91
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011312 | ND | Aliivibrio salmonicida | Aliivibrio salmonicida LFI1238 chromosome 1 |
DNA section
IS Length : 1432 bp
Ends
oriIS : AATAGGCGCCTACGGCGCAAATCAAAAGGACTCAACCTCTTCCATTGTTGCCAATAAATCGTTTATCCTATCGCCATGCACGCATATAAACCCCTGAAAC II struct. : No
terIS : ATAATTATATTTTCGATACCTTTTAAAAAAACAGCGATGGTGAAATTGGCTTTTTTAGACGGGCCAATGCTAACTCAGCAACATTCAAATTCCTTACCTT II struct. : No
Insertion site
| Left flank | LE cleavage site | Right flank | RE cleavage site |
|---|---|---|---|
| ACCAAGGTTA GAAC | CAAG TGCAATGCTT |
DNA sequence
AATAGGCGCCTACGGCGCAAATCAAAAGGACTCAACCTCTTCCATTGTTGCCAATAAATCGTTTATCCTATCGCCATGCACGCATATAAACCCCTGAAAC
AATTATTTAATAGTCAAAATAACTGGCTTAAATTTCTTCATAATAACAAAGCTAACCTAAGAGCGGTCGTGATTGAAAATGTCACAAAGATGCTGTCCTG
TGGGACAGCGGCTTTTGGCTCTCGCGAATATCATTGTTGCAACCCTGACTGTACCCATATCAAATATATTCACCAAACCTGTAAATCTCGAGCGTGCAGT
AGCTGTGGCATGAAAGCCACAGAGCGATGGATACAAAAGCAACAACATGTCTTCCCTGAATGCGAATATCAACACATCACCTTTACCCTTCCAAACACGC
TATGGCCTATCTTTCGTCATAACCGTTTGTTAAATAAATTATTCAAATGTGCTGCAAACATTCTGCTGGGATGGGCAAAAGATAAAGGAATAGATGTCGG
TATCTTTTGTGCTCTTCATACTTACGGTCGAAAACTGAATTGGAATACGCACTTACATTTATCGGTCACTCGTGGGGGAATTTGTGAACGTACCGGTTTA
TGGAAACCCATTTACTTCCAAATGAAAACGACAGAGCCTTGTTGGAGAGCGGCTATCGTCAGTTTATTGGGTAAGGCTTATTATGAGCTTGATTTATCAA
GCGAAGAATGCCCCTATATCCGTAATAAAACGGATTGGTCACGCTTTTTAAGCAGTCAATATAATCGTCGTTGGAAGCTTCATTTTGCTAAAAAGACAAA
TAATGTAAAACCGACGATGAACTATCTTGGTCGGTATTTAAAACGGCCCCCAATTTCAGCGTCACGTTTAAGTCATTACGCCAAAGGCGGAATGATAACG
TTTAATTATTTAGACCATCGAACAGGAACAACAGACAGCCTAACATTATCACCAGAAGAGATGATAAGACGGATAGTAGAGCACTATCCTGATAAACATT
TCAAGATGATCCGATACTACGGTTTTTTATCAATGCGTCGTCGTGGAGAAGCTCTGCCTAGAGTTTATGCAGCTTTAGGTATGACAATAGAAGCTGAGCC
GAAAATGCCAGGGTATGCCGCAATGTTAAAAGGATATGTAAAAGTAGATCCGTACGAATGTATTTTATGTGAAAGTCGTCTGGTGTTTACGAATTTCCGA
GTCGGAAATTCGGTCAATGATTTAGTCACCCATGCGATAGTTCAGTCAGAATTGAGGGCAGCATAATAAGGTTTGTAGGATAAGTGTATCTAAAACTCAT
GAAATAGGGCTAAAACAGTTATAAAATCCCCGATAATTATATTTTCGATACCTTTTAAAAAAACAGCGATGGTGAAATTGGCTTTTTTAGACGGGCCAAT
GCTAACTCAGCAACATTCAAATTCCTTACCTT
AATTATTTAATAGTCAAAATAACTGGCTTAAATTTCTTCATAATAACAAAGCTAACCTAAGAGCGGTCGTGATTGAAAATGTCACAAAGATGCTGTCCTG
TGGGACAGCGGCTTTTGGCTCTCGCGAATATCATTGTTGCAACCCTGACTGTACCCATATCAAATATATTCACCAAACCTGTAAATCTCGAGCGTGCAGT
AGCTGTGGCATGAAAGCCACAGAGCGATGGATACAAAAGCAACAACATGTCTTCCCTGAATGCGAATATCAACACATCACCTTTACCCTTCCAAACACGC
TATGGCCTATCTTTCGTCATAACCGTTTGTTAAATAAATTATTCAAATGTGCTGCAAACATTCTGCTGGGATGGGCAAAAGATAAAGGAATAGATGTCGG
TATCTTTTGTGCTCTTCATACTTACGGTCGAAAACTGAATTGGAATACGCACTTACATTTATCGGTCACTCGTGGGGGAATTTGTGAACGTACCGGTTTA
TGGAAACCCATTTACTTCCAAATGAAAACGACAGAGCCTTGTTGGAGAGCGGCTATCGTCAGTTTATTGGGTAAGGCTTATTATGAGCTTGATTTATCAA
GCGAAGAATGCCCCTATATCCGTAATAAAACGGATTGGTCACGCTTTTTAAGCAGTCAATATAATCGTCGTTGGAAGCTTCATTTTGCTAAAAAGACAAA
TAATGTAAAACCGACGATGAACTATCTTGGTCGGTATTTAAAACGGCCCCCAATTTCAGCGTCACGTTTAAGTCATTACGCCAAAGGCGGAATGATAACG
TTTAATTATTTAGACCATCGAACAGGAACAACAGACAGCCTAACATTATCACCAGAAGAGATGATAAGACGGATAGTAGAGCACTATCCTGATAAACATT
TCAAGATGATCCGATACTACGGTTTTTTATCAATGCGTCGTCGTGGAGAAGCTCTGCCTAGAGTTTATGCAGCTTTAGGTATGACAATAGAAGCTGAGCC
GAAAATGCCAGGGTATGCCGCAATGTTAAAAGGATATGTAAAAGTAGATCCGTACGAATGTATTTTATGTGAAAGTCGTCTGGTGTTTACGAATTTCCGA
GTCGGAAATTCGGTCAATGATTTAGTCACCCATGCGATAGTTCAGTCAGAATTGAGGGCAGCATAATAAGGTTTGTAGGATAAGTGTATCTAAAACTCAT
GAAATAGGGCTAAAACAGTTATAAAATCCCCGATAATTATATTTTCGATACCTTTTAAAAAAACAGCGATGGTGAAATTGGCTTTTTTAGACGGGCCAAT
GCTAACTCAGCAACATTCAAATTCCTTACCTT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1191 bp | 396 aa | 76 | 1266 | + | No |
Chemistry : Y2
ORF sequence :
MHAYKPLKQLFNSQNNWLKFLHNNKANLRAVVIENVTKMLSCGTAAFGSREYHCCNPDCTHIKYIHQTCKSRACSSCGMKATERWIQKQQHVFPECEYQH
ITFTLPNTLWPIFRHNRLLNKLFKCAANILLGWAKDKGIDVGIFCALHTYGRKLNWNTHLHLSVTRGGICERTGLWKPIYFQMKTTEPCWRAAIVSLLGK
AYYELDLSSEECPYIRNKTDWSRFLSSQYNRRWKLHFAKKTNNVKPTMNYLGRYLKRPPISASRLSHYAKGGMITFNYLDHRTGTTDSLTLSPEEMIRRI
VEHYPDKHFKMIRYYGFLSMRRRGEALPRVYAALGMTIEAEPKMPGYAAMLKGYVKVDPYECILCESRLVFTNFRVGNSVNDLVTHAIVQSELRAA
ITFTLPNTLWPIFRHNRLLNKLFKCAANILLGWAKDKGIDVGIFCALHTYGRKLNWNTHLHLSVTRGGICERTGLWKPIYFQMKTTEPCWRAAIVSLLGK
AYYELDLSSEECPYIRNKTDWSRFLSSQYNRRWKLHFAKKTNNVKPTMNYLGRYLKRPPISASRLSHYAKGGMITFNYLDHRTGTTDSLTLSPEEMIRRI
VEHYPDKHFKMIRYYGFLSMRRRGEALPRVYAALGMTIEAEPKMPGYAAMLKGYVKVDPYECILCESRLVFTNFRVGNSVNDLVTHAIVQSELRAA
Blast result :
Comments
ISVsa9 is 63% aa similar to ISPsy3.
References
1] ISfinder annotation (2009)
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.
2] Hjerde,E., Lorentzen,M.S., Holden,M.T.G., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R. (2008) Direct submission GenBank.