ISGur11
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009483 | ND | Geobacter uraniumreducens | Geobacter uraniumreducens Rf4 |
DNA section
IS Length : 1838 bp
Ends
IR Length : 8/12
IRL : TGGCTCACCAACCTTGCCCGACAGACGCTGGCCCGCCTGACGGACAGCTG
IRR : TGGGTCATGAGCGCCCGGGAACTGCTGCTGATACCCACCCCCAGCTCCCC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCTCAGGCAC | GAGAATCAAG | 0 |
DNA sequence
TGGCTCACCAACCTTGCCCGACAGACGCTGGCCCGCCTGACGGACAGCTGGAAAGAAGGCTTGCTGGCAGCCTTCGACCGGCTCCTTGCCACGGGTGTGA
CTCCGGTCGGCAAGATCATTTAGTCTGGCAATCCGAACCGCGTCGCTGCCACCCCAGTGACCTCTGCCTTCGACAGCTCCTTGTGCCTGATTTATGGTGG
CGTAACTCACCACGAAAGGAGCTTTTTTATGACGGAAGAGCAGAAACAACGGGTGGCGGTGTTCCGTTTCGGGATCATCCACGACTTTGTAGGCGGCGCC
CGCCTGGACCACGGCGAACGGGAGCGGCTTCTGCGGGAGAAGTGCGCCCGCAAATGGGAGATTCCCTGTTCCAATCAGACACGGCTTAGCCGCAGCACCA
TTCTGCGCTGGATCGGCCTTTACCTGAAGGAGAGGGGGAAGCTGGAAGCCTTGTACCCCCAGGGAAGAAACGACAGGGGTATGTCGCGTGTGCTGGACCA
GGAGACGGGGCTCGCCTTGGCGCAACTGCGGCGTCAGCAGCCTGAGCTTACCGTTCCCGAGCTGGTCAAGCAGATGCACGAGCGCCGGCTGGTCACCGAT
GGGGTTGGCTTGAGCCTCTCCACCGCCTATCGGTTTCTGCACCGCCACGATCTGATGGGAAAGCAACCAGCCCCCGTGGACCGGCGCAAGTTCGAGGCGG
AGCTTCCCAACGATCTGTGGCAGAGCGACGTGATGCACGGCCCCATGCTGTTAAGCGGCGACAAGCGGCGCAAGACATACCTCATCGCCTTCATCGACGA
CCACTCACGGCTGATTCCCCATGGGCGGTTCTACCTCTCGGAAGGAGTTGCCTGCTTCATGTCCGCCTTCTCCGATGCCGTGCTGAGAAGGGGGCTGCCA
AGAAAGCTCTACGTGGACAACGGCTCGGCGTTTCGCTCCCGCCAGCTGGAATACACGGCCGCCGCCCTGGGCATCGCGCTGGTACACGCACGGCCCTATC
AGCCACAGGGGAAAGGGAAGATCGAAAGGTTCTTCAAAAATGTGCGAACCAGCTTCCTGCCCTCCTTCAAGGGGGAGACTCTGGAAGAGATCAACGAAGC
CTTCGAGTTGTGGCTTAACGACTACTATCATCAACGAAGCCACGGCTCCACGGGAGAGACCCCGTTCAAGCGCTTCACCTCCCGCATGGAGTGCCTGCGT
CCGGCGCCCGACAACCTCAAGGATTACTTCAGGAAGACGGTGCGGCGGCTGGTGAACAAGGACCGCTCCGTGGTGGTGGACCGGCGGCTGTTCGAGGCTC
CCGTGGAGCTCATCGGCAAGCGAGTGGAACTGCTCTACTTCGAGGAGAGCCCCGAGCAGGTGGAGATCCGCTGTGCGGAGAAGTCATATGGCCTCCTGCG
CCAGGTGGATTTGCACGTCAACAGCCGGGTGAAAAGGGACAAGAATGGCCAGATCGAACTGTCAGGCGACGGTGCCTGCGAGAGCGGCAGGCTGTGGGAG
GGAGAGTGATGAGCGGCTATCGACAGTTCTTCGGCCTGCAAAACGAGCCCTTCACTACGGATATCAAACGCAAGGACATCCTGGTCACGGCGGCGCTCAA
AGGGGTGGAGGAGCGCCTCCATTACGCGCTCAGGATCGGCGGGATCGCGGTCGTCACGGGGGAGATCGGTAGCGGCAAGTCCACGGCGCTACGCTACGTG
ATCGGCGGGCTGCATCCCTCCGAGCACCGGATCATTTACGTCACCGCTTCCAGCGGCTCGATCCTGGAGTTGTATCGGCAGATACTGGGGGAGCTGGGGG
TGGGTATCAGCAGCAGTTCCCGGGCGCTCATGACCCA
CTCCGGTCGGCAAGATCATTTAGTCTGGCAATCCGAACCGCGTCGCTGCCACCCCAGTGACCTCTGCCTTCGACAGCTCCTTGTGCCTGATTTATGGTGG
CGTAACTCACCACGAAAGGAGCTTTTTTATGACGGAAGAGCAGAAACAACGGGTGGCGGTGTTCCGTTTCGGGATCATCCACGACTTTGTAGGCGGCGCC
CGCCTGGACCACGGCGAACGGGAGCGGCTTCTGCGGGAGAAGTGCGCCCGCAAATGGGAGATTCCCTGTTCCAATCAGACACGGCTTAGCCGCAGCACCA
TTCTGCGCTGGATCGGCCTTTACCTGAAGGAGAGGGGGAAGCTGGAAGCCTTGTACCCCCAGGGAAGAAACGACAGGGGTATGTCGCGTGTGCTGGACCA
GGAGACGGGGCTCGCCTTGGCGCAACTGCGGCGTCAGCAGCCTGAGCTTACCGTTCCCGAGCTGGTCAAGCAGATGCACGAGCGCCGGCTGGTCACCGAT
GGGGTTGGCTTGAGCCTCTCCACCGCCTATCGGTTTCTGCACCGCCACGATCTGATGGGAAAGCAACCAGCCCCCGTGGACCGGCGCAAGTTCGAGGCGG
AGCTTCCCAACGATCTGTGGCAGAGCGACGTGATGCACGGCCCCATGCTGTTAAGCGGCGACAAGCGGCGCAAGACATACCTCATCGCCTTCATCGACGA
CCACTCACGGCTGATTCCCCATGGGCGGTTCTACCTCTCGGAAGGAGTTGCCTGCTTCATGTCCGCCTTCTCCGATGCCGTGCTGAGAAGGGGGCTGCCA
AGAAAGCTCTACGTGGACAACGGCTCGGCGTTTCGCTCCCGCCAGCTGGAATACACGGCCGCCGCCCTGGGCATCGCGCTGGTACACGCACGGCCCTATC
AGCCACAGGGGAAAGGGAAGATCGAAAGGTTCTTCAAAAATGTGCGAACCAGCTTCCTGCCCTCCTTCAAGGGGGAGACTCTGGAAGAGATCAACGAAGC
CTTCGAGTTGTGGCTTAACGACTACTATCATCAACGAAGCCACGGCTCCACGGGAGAGACCCCGTTCAAGCGCTTCACCTCCCGCATGGAGTGCCTGCGT
CCGGCGCCCGACAACCTCAAGGATTACTTCAGGAAGACGGTGCGGCGGCTGGTGAACAAGGACCGCTCCGTGGTGGTGGACCGGCGGCTGTTCGAGGCTC
CCGTGGAGCTCATCGGCAAGCGAGTGGAACTGCTCTACTTCGAGGAGAGCCCCGAGCAGGTGGAGATCCGCTGTGCGGAGAAGTCATATGGCCTCCTGCG
CCAGGTGGATTTGCACGTCAACAGCCGGGTGAAAAGGGACAAGAATGGCCAGATCGAACTGTCAGGCGACGGTGCCTGCGAGAGCGGCAGGCTGTGGGAG
GGAGAGTGATGAGCGGCTATCGACAGTTCTTCGGCCTGCAAAACGAGCCCTTCACTACGGATATCAAACGCAAGGACATCCTGGTCACGGCGGCGCTCAA
AGGGGTGGAGGAGCGCCTCCATTACGCGCTCAGGATCGGCGGGATCGCGGTCGTCACGGGGGAGATCGGTAGCGGCAAGTCCACGGCGCTACGCTACGTG
ATCGGCGGGCTGCATCCCTCCGAGCACCGGATCATTTACGTCACCGCTTCCAGCGGCTCGATCCTGGAGTTGTATCGGCAGATACTGGGGGAGCTGGGGG
TGGGTATCAGCAGCAGTTCCCGGGCGCTCATGACCCA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1281 bp | 426 aa | 229 | 1509 | + | No |
Chemistry : DDE
ORF sequence :
MTEEQKQRVAVFRFGIIHDFVGGARLDHGERERLLREKCARKWEIPCSNQTRLSRSTILRWIGLYLKERGKLEALYPQGRNDRGMSRVLDQETGLALAQL
RRQQPELTVPELVKQMHERRLVTDGVGLSLSTAYRFLHRHDLMGKQPAPVDRRKFEAELPNDLWQSDVMHGPMLLSGDKRRKTYLIAFIDDHSRLIPHGR
FYLSEGVACFMSAFSDAVLRRGLPRKLYVDNGSAFRSRQLEYTAAALGIALVHARPYQPQGKGKIERFFKNVRTSFLPSFKGETLEEINEAFELWLNDYY
HQRSHGSTGETPFKRFTSRMECLRPAPDNLKDYFRKTVRRLVNKDRSVVVDRRLFEAPVELIGKRVELLYFEESPEQVEIRCAEKSYGLLRQVDLHVNSR
VKRDKNGQIELSGDGACESGRLWEGE
RRQQPELTVPELVKQMHERRLVTDGVGLSLSTAYRFLHRHDLMGKQPAPVDRRKFEAELPNDLWQSDVMHGPMLLSGDKRRKTYLIAFIDDHSRLIPHGR
FYLSEGVACFMSAFSDAVLRRGLPRKLYVDNGSAFRSRQLEYTAAALGIALVHARPYQPQGKGKIERFFKNVRTSFLPSFKGETLEEINEAFELWLNDYY
HQRSHGSTGETPFKRFTSRMECLRPAPDNLKDYFRKTVRRLVNKDRSVVVDRRLFEAPVELIGKRVELLYFEESPEQVEIRCAEKSYGLLRQVDLHVNSR
VKRDKNGQIELSGDGACESGRLWEGE
Blast result :
Comments
ISGur11 is 55 % aa similar to ISBst1.
There is only one copy on the genome, we are not sure of extremites of this sequence.
There is only one copy on the genome, we are not sure of extremites of this sequence.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavinadel Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S.,Chertkov,O., Brettin,T., Bruce,D., Han,C., Schmutz,J., Larimer,F.,Land,M., Hauser,L., Kyrpides,N., Mikhailova,N., Shelobolina,E.,Aklujkar,M., Lovley,D. and Richardson,P.(2007) Direct submission GenBank.