ISAba9

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Acinetobacter baumannii
Acinetobacter baumannii
DNA section
IS Length : 974 bp

Ends


IR Length : 17

IRL : ACCCCAATCTCAACTTTTTAAGTGATTGAAATAAAAAGGACATAACCCTA
IRR : ACGCCAATCTCAACTTAAAATAAGATTTTCGAATTGAATTGGTGAATGAC

Insertion site


Left flankDirect repeatRight flankDR Length
TTTTAGATATTTGTTTAAGATAAGATAT8

DNA sequence

ACCCCAATCTCAACTTTTTAAGTGATTGAAATAAAAAGGACATAACCCTATTTTAGTTTCCACCAAGAAATTAAAGCAAAGTTATGTCCATTGAAGAATT
TATCATTTTTGTCTATGTAATCATAGAAGAACTTTATCCCATTGTTGTTACTCAGCCCCTGAGAACTCGTGGTTTTCCGCCTGCTGTTACTGATGCAGAA
ATCATCACTATGCAAATAGTAGGTGAATTTCTTGGTTTAGATACAGACAAAAATATTTGGATGTATTTCAAAAACAATTGGTTAGAATGGTTTCCAAAAT
TAGGATCTTATCCCAATTTCTGTAAACATTGTGCAAACCTGTGGCATGTCAGTCAATCCATTATGGCACAGCTCATTCAGCGTTATGGTTCAGATAACAT
TCACTTTATTGATGGCTTCCCACTCCCTGTCTGTAGTTATACCAGAGCGAGAAAGCATAAAAACTTTAAAGAATACGCAGGTTTTAGTTATTGTGCTGCA
AAACAAGAAAAATATTATGGTTTCAAAGCTCATATCGTCATTAATCTTTCAGGCATGATTTCGGGTTATACCTTTGCACCTGCTCATTGTGATGAGCGAG
ATGTTGCACCTGAAATTACGAATGATATTTACGGTTTACTGGGAGCAGATAAGGGCTATTTAAGACCAGAATTGAAACGATATTATGAATATCAGGGTAT
TGATTTACAAACACCCTTTAGAAAAAACATGATAGATTTCAGACCTAAAGAGACACTGCAAATACTGATGAAAGCCAGAAGAAAGATTGAAACAGTGATT
GGTCAATTAACAGATCGCTTTCACATTCAGAAAGTGAGGGCAAAAGATCTATGGCATTTAACCCACCGCATAACTCGTAAAATTCTGTCGCATACAATTT
GTGTGGTGCTAAATAAAAAGCTTGGTCATTCACCAATTCAATTCGAAAATCTTATTTTAAGTTGAGATTGGCGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
882 bp293 aa84965+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSIEEFIIFVYVIIEELYPIVVTQPLRTRGFPPAVTDAEIITMQIVGEFLGLDTDKNIWMYFKNNWLEWFPKLGSYPNFCKHCANLWHVSQSIMAQLIQR
YGSDNIHFIDGFPLPVCSYTRARKHKNFKEYAGFSYCAAKQEKYYGFKAHIVINLSGMISGYTFAPAHCDERDVAPEITNDIYGLLGADKGYLRPELKRY
YEYQGIDLQTPFRKNMIDFRPKETLQILMKARRKIETVIGQLTDRFHIQKVRAKDLWHLTHRITRKILSHTICVVLNKKLGHSPIQFENLILS

 

Blast result :
Comments
ISAba9 is 88% aa similar to ISAba825.
References
1] Laurent Poirel (2007) Direct submission.