ISPsy27

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007005 ND Pseudomonas syringae
Pseudomonas syringae pv. syringae B728a
DNA section
IS Length : 1596 bp

Ends


IR Length : 16

IRL : CAGACTGTGTGAAAACCTAGCAATCTTTGCAGCGGTCAAAGAAAATGCTC
IRR : CAGACTGTGTGAAAACGCACTGAAGGCAAGCCCAACAAACGCCCCGACTT

Insertion site


Left flankDirect repeatRight flankDR Length
CACCGAAAAAGGGCCCGTCTGGGCCCTTTTTCAGGTGAAGCG4

DNA sequence

CAGACTGTGTGAAAACCTAGCAATCTTTGCAGCGGTCAAAGAAAATGCTCCGTATCGAAAGGTACGGAGCATTTTTCGTTATGGCCTACATCCAAGGAGA
GTCTCGCAGCCAGACCAGTCTATTCCCGGTCTCGCTGGAAGAGTTGATCCCTGAGGATCACCTCGTTCGGGTCATAGACCTATACGTCGCCAAGCTGGAT
TTGGTGCAACTGGGTTTTGATAAAGCGCTTCCCAAGAACACCGGTCGCCCGTCCTATGACCCCGCCGATCAGCTCAAGCTGTACCTCTACGGCTATTTCC
AGCGGATTCGCTCATCGCGGCGTCTTGAAGCCGAGTGTCAGCGCAATATCGAAGTGATTTGGCTGATTAACCGACTCAAACCCGATTTCAAGACCATCGC
CGACTTTCGTAAAAACAACAAACTTGCCTTTGTGGCGACGTGTCGCGCCTTCGTTCGATTCTGCCGCATGGCGGGTCTGATCGCAGGCGACTTGGTGGCC
ATCGATGGCAGTAAGTTTCAGGCTGTCGCTTCCTCGCGGCGTCACATGAACCTCAAACAACTCAAGCGTCAGGAAGAAAAGCTGGACAAGCGCATAGCTC
AGTATCTGGCGGAGCTGGATGAGGCCGACAAGGCCGAGGCTGGAGAGGTGATTGATCGCGGCGCGATCAAAACAGCACTGGCGCAGCTTGAAGTTCGGCA
GCACGACAATCAGAGCTGCCAAGCGTTGATGAGCTCGATGGGCCTGGAGCAGTTCAACACCCATGAAAGCGATGCCCGAATGATGCGTACGCCCAAAGGG
CCACGGGTGGCCTACAACGTACAAACCGCCGTGGACGCCGCACATTGCCTGATTCTGCACCATGAAGTGACTCAGGACGGCGATGACCGAAAACAGCTGG
AGCCAATGGCCAAAGCCGCCAAAGAACATCTGGAACAAGATGCCTTGAGCGTGACGGCCGATGCCGGCTATTCAAACGGCCAGCAGTTTCAGGCCTGCGA
GGAGGCTGGGATAACGGTCTATGTGCCGCCCAATCGCACGGTCAACCCAGGCGGTGAGGAACTCTTTGAGCGCAAAGACTTTACCTACGAAGCCGAACAC
GATCGTTATCAGTGCCCGGCGGGCAAATGGTTGACGCTCAAGCAGCGCAACAGGGGCGATCGGATCTATCAGGCACATGTCAGCGACTGCGCCGCCTGCC
CACTCAAATCCCGATGCACTGGCGCTCAACGCCGCTATGTCTCACGCCATGCCCATGAGGCAGCCTTTGAGCGAATGGAGCAGCGAATGCTCGCGCATCC
GCAAATGATGGCCAGTCGAAGATCCATCGTTGAGCATCCTTTCGGCAATCTCAAGCAATGGCTGTTGGGGAATGGTCGCTTCCTGCTGCGCCAGTTGGAG
GGAGCAAAAGCGGAAATGGCCTTGGCGGTGAATGCTTACAACCTCAAGCGAGCGATTAGCGTACTCGGAGCCCGCCAATTGATGGCGCTAATGGGCTGAA
AAGTTTTTTTTCGACTGTTGCCCACACAAAAACAAACGCCCCGAACAAGTCGGGGCGTTTGTTGGGCTTGCCTTCAGTGCGTTTTCACACAGTCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1419 bp472 aa811499+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAYIQGESRSQTSLFPVSLEELIPEDHLVRVIDLYVAKLDLVQLGFDKALPKNTGRPSYDPADQLKLYLYGYFQRIRSSRRLEAECQRNIEVIWLINRLK
PDFKTIADFRKNNKLAFVATCRAFVRFCRMAGLIAGDLVAIDGSKFQAVASSRRHMNLKQLKRQEEKLDKRIAQYLAELDEADKAEAGEVIDRGAIKTAL
AQLEVRQHDNQSCQALMSSMGLEQFNTHESDARMMRTPKGPRVAYNVQTAVDAAHCLILHHEVTQDGDDRKQLEPMAKAAKEHLEQDALSVTADAGYSNG
QQFQACEEAGITVYVPPNRTVNPGGEELFERKDFTYEAEHDRYQCPAGKWLTLKQRNRGDRIYQAHVSDCAACPLKSRCTGAQRRYVSRHAHEAAFERME
QRMLAHPQMMASRRSIVEHPFGNLKQWLLGNGRFLLRQLEGAKAEMALAVNAYNLKRAISVLGARQLMALMG

 

Blast result :
Comments
ISPsy27 is 85% DNA and 92% aa similar to ISPsy6. ISPsy27 is disrupted by the insertion of ISPsy2 which generate a 5 bp duplication (CCTAG).
References
1] ISfinder (2005) Direct submission