ISPsy27
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007005 | ND | Pseudomonas syringae | Pseudomonas syringae pv. syringae B728a |
DNA section
IS Length : 1596 bp
Ends
IR Length : 16
IRL : CAGACTGTGTGAAAACCTAGCAATCTTTGCAGCGGTCAAAGAAAATGCTC
IRR : CAGACTGTGTGAAAACGCACTGAAGGCAAGCCCAACAAACGCCCCGACTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACCGAAAAAGGGCCC | GTCT | GGGCCCTTTTTCAGGTGAAGCG | 4 |
DNA sequence
CAGACTGTGTGAAAACCTAGCAATCTTTGCAGCGGTCAAAGAAAATGCTCCGTATCGAAAGGTACGGAGCATTTTTCGTTATGGCCTACATCCAAGGAGA
GTCTCGCAGCCAGACCAGTCTATTCCCGGTCTCGCTGGAAGAGTTGATCCCTGAGGATCACCTCGTTCGGGTCATAGACCTATACGTCGCCAAGCTGGAT
TTGGTGCAACTGGGTTTTGATAAAGCGCTTCCCAAGAACACCGGTCGCCCGTCCTATGACCCCGCCGATCAGCTCAAGCTGTACCTCTACGGCTATTTCC
AGCGGATTCGCTCATCGCGGCGTCTTGAAGCCGAGTGTCAGCGCAATATCGAAGTGATTTGGCTGATTAACCGACTCAAACCCGATTTCAAGACCATCGC
CGACTTTCGTAAAAACAACAAACTTGCCTTTGTGGCGACGTGTCGCGCCTTCGTTCGATTCTGCCGCATGGCGGGTCTGATCGCAGGCGACTTGGTGGCC
ATCGATGGCAGTAAGTTTCAGGCTGTCGCTTCCTCGCGGCGTCACATGAACCTCAAACAACTCAAGCGTCAGGAAGAAAAGCTGGACAAGCGCATAGCTC
AGTATCTGGCGGAGCTGGATGAGGCCGACAAGGCCGAGGCTGGAGAGGTGATTGATCGCGGCGCGATCAAAACAGCACTGGCGCAGCTTGAAGTTCGGCA
GCACGACAATCAGAGCTGCCAAGCGTTGATGAGCTCGATGGGCCTGGAGCAGTTCAACACCCATGAAAGCGATGCCCGAATGATGCGTACGCCCAAAGGG
CCACGGGTGGCCTACAACGTACAAACCGCCGTGGACGCCGCACATTGCCTGATTCTGCACCATGAAGTGACTCAGGACGGCGATGACCGAAAACAGCTGG
AGCCAATGGCCAAAGCCGCCAAAGAACATCTGGAACAAGATGCCTTGAGCGTGACGGCCGATGCCGGCTATTCAAACGGCCAGCAGTTTCAGGCCTGCGA
GGAGGCTGGGATAACGGTCTATGTGCCGCCCAATCGCACGGTCAACCCAGGCGGTGAGGAACTCTTTGAGCGCAAAGACTTTACCTACGAAGCCGAACAC
GATCGTTATCAGTGCCCGGCGGGCAAATGGTTGACGCTCAAGCAGCGCAACAGGGGCGATCGGATCTATCAGGCACATGTCAGCGACTGCGCCGCCTGCC
CACTCAAATCCCGATGCACTGGCGCTCAACGCCGCTATGTCTCACGCCATGCCCATGAGGCAGCCTTTGAGCGAATGGAGCAGCGAATGCTCGCGCATCC
GCAAATGATGGCCAGTCGAAGATCCATCGTTGAGCATCCTTTCGGCAATCTCAAGCAATGGCTGTTGGGGAATGGTCGCTTCCTGCTGCGCCAGTTGGAG
GGAGCAAAAGCGGAAATGGCCTTGGCGGTGAATGCTTACAACCTCAAGCGAGCGATTAGCGTACTCGGAGCCCGCCAATTGATGGCGCTAATGGGCTGAA
AAGTTTTTTTTCGACTGTTGCCCACACAAAAACAAACGCCCCGAACAAGTCGGGGCGTTTGTTGGGCTTGCCTTCAGTGCGTTTTCACACAGTCTG
GTCTCGCAGCCAGACCAGTCTATTCCCGGTCTCGCTGGAAGAGTTGATCCCTGAGGATCACCTCGTTCGGGTCATAGACCTATACGTCGCCAAGCTGGAT
TTGGTGCAACTGGGTTTTGATAAAGCGCTTCCCAAGAACACCGGTCGCCCGTCCTATGACCCCGCCGATCAGCTCAAGCTGTACCTCTACGGCTATTTCC
AGCGGATTCGCTCATCGCGGCGTCTTGAAGCCGAGTGTCAGCGCAATATCGAAGTGATTTGGCTGATTAACCGACTCAAACCCGATTTCAAGACCATCGC
CGACTTTCGTAAAAACAACAAACTTGCCTTTGTGGCGACGTGTCGCGCCTTCGTTCGATTCTGCCGCATGGCGGGTCTGATCGCAGGCGACTTGGTGGCC
ATCGATGGCAGTAAGTTTCAGGCTGTCGCTTCCTCGCGGCGTCACATGAACCTCAAACAACTCAAGCGTCAGGAAGAAAAGCTGGACAAGCGCATAGCTC
AGTATCTGGCGGAGCTGGATGAGGCCGACAAGGCCGAGGCTGGAGAGGTGATTGATCGCGGCGCGATCAAAACAGCACTGGCGCAGCTTGAAGTTCGGCA
GCACGACAATCAGAGCTGCCAAGCGTTGATGAGCTCGATGGGCCTGGAGCAGTTCAACACCCATGAAAGCGATGCCCGAATGATGCGTACGCCCAAAGGG
CCACGGGTGGCCTACAACGTACAAACCGCCGTGGACGCCGCACATTGCCTGATTCTGCACCATGAAGTGACTCAGGACGGCGATGACCGAAAACAGCTGG
AGCCAATGGCCAAAGCCGCCAAAGAACATCTGGAACAAGATGCCTTGAGCGTGACGGCCGATGCCGGCTATTCAAACGGCCAGCAGTTTCAGGCCTGCGA
GGAGGCTGGGATAACGGTCTATGTGCCGCCCAATCGCACGGTCAACCCAGGCGGTGAGGAACTCTTTGAGCGCAAAGACTTTACCTACGAAGCCGAACAC
GATCGTTATCAGTGCCCGGCGGGCAAATGGTTGACGCTCAAGCAGCGCAACAGGGGCGATCGGATCTATCAGGCACATGTCAGCGACTGCGCCGCCTGCC
CACTCAAATCCCGATGCACTGGCGCTCAACGCCGCTATGTCTCACGCCATGCCCATGAGGCAGCCTTTGAGCGAATGGAGCAGCGAATGCTCGCGCATCC
GCAAATGATGGCCAGTCGAAGATCCATCGTTGAGCATCCTTTCGGCAATCTCAAGCAATGGCTGTTGGGGAATGGTCGCTTCCTGCTGCGCCAGTTGGAG
GGAGCAAAAGCGGAAATGGCCTTGGCGGTGAATGCTTACAACCTCAAGCGAGCGATTAGCGTACTCGGAGCCCGCCAATTGATGGCGCTAATGGGCTGAA
AAGTTTTTTTTCGACTGTTGCCCACACAAAAACAAACGCCCCGAACAAGTCGGGGCGTTTGTTGGGCTTGCCTTCAGTGCGTTTTCACACAGTCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1419 bp | 472 aa | 81 | 1499 | + | No |
Chemistry : DDE
ORF sequence :
MAYIQGESRSQTSLFPVSLEELIPEDHLVRVIDLYVAKLDLVQLGFDKALPKNTGRPSYDPADQLKLYLYGYFQRIRSSRRLEAECQRNIEVIWLINRLK
PDFKTIADFRKNNKLAFVATCRAFVRFCRMAGLIAGDLVAIDGSKFQAVASSRRHMNLKQLKRQEEKLDKRIAQYLAELDEADKAEAGEVIDRGAIKTAL
AQLEVRQHDNQSCQALMSSMGLEQFNTHESDARMMRTPKGPRVAYNVQTAVDAAHCLILHHEVTQDGDDRKQLEPMAKAAKEHLEQDALSVTADAGYSNG
QQFQACEEAGITVYVPPNRTVNPGGEELFERKDFTYEAEHDRYQCPAGKWLTLKQRNRGDRIYQAHVSDCAACPLKSRCTGAQRRYVSRHAHEAAFERME
QRMLAHPQMMASRRSIVEHPFGNLKQWLLGNGRFLLRQLEGAKAEMALAVNAYNLKRAISVLGARQLMALMG
PDFKTIADFRKNNKLAFVATCRAFVRFCRMAGLIAGDLVAIDGSKFQAVASSRRHMNLKQLKRQEEKLDKRIAQYLAELDEADKAEAGEVIDRGAIKTAL
AQLEVRQHDNQSCQALMSSMGLEQFNTHESDARMMRTPKGPRVAYNVQTAVDAAHCLILHHEVTQDGDDRKQLEPMAKAAKEHLEQDALSVTADAGYSNG
QQFQACEEAGITVYVPPNRTVNPGGEELFERKDFTYEAEHDRYQCPAGKWLTLKQRNRGDRIYQAHVSDCAACPLKSRCTGAQRRYVSRHAHEAAFERME
QRMLAHPQMMASRRSIVEHPFGNLKQWLLGNGRFLLRQLEGAKAEMALAVNAYNLKRAISVLGARQLMALMG
Blast result :
Comments
ISPsy27 is 85% DNA and 92% aa similar to ISPsy6. ISPsy27 is disrupted by the insertion of ISPsy2 which generate a 5 bp duplication (CCTAG).
References
1] ISfinder (2005) Direct submission