ISPa26

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EU000222 ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
DNA section
IS Length : 1193 bp

Ends


IR Length : 12/18

IRL : GGAAGGTCTGAAGTAGCCGATGTTTTCCGGCTACTTCGCCATCGACACTT
IRR : GGAAATCCTGAAAAAGACTTCCTGATTTGGCAAAATCCCCGGACACCAAT

Insertion site


Left flankDirect repeatRight flankDR Length
CGCCATTGCACTGGCGGTTTCCGC4

DNA sequence

GGAAGGTCTGAAGTAGCCGATGTTTTCCGGCTACTTCGCCATCGACACTTTCAAAAAACGGTAGCCGCTCAAATCCCGGTCAAACCTGCCGTCTATTTCA
GCCTTTTTTGCCGCTGCAAGCACCTCGCAGCAGTCACTTCACTCTTCACGGACGCACCTCTCCTGCATTGGAGAGCAAATGTCGACGCGCCATCCAAATG
TTCGACAGGGCGAACAGCGTCACCATCTGAGCAGTGTTTTTCACCAAGCCTCGGAAGCGCACTTTCGTATAACCAAACTGGCGCTTGATCACCCGAAATG
GATGCTCAACCTTGGAGCGAACCTGGGCCTTGGCTCTTTCGATCTTACGTATCGCTTTGTATAACGCGCTGCGGTTACCGTGCTTTTTGTAAGTGCTGCG
CCGGGCTGCAATCTGCCAGATGACTTGGCGCCCCTCATGCTCTTCACGCTTCTCTACACCGGTATAGCCCGCATCAGCGCAGACCACGTTCTCACCACCG
TGCAGCAGTTTGTCGACTTGGGTTACGTCCGCGACGTTGGCCGCAGTGACCACCACGCTGTGCACAAGCCCGGACTCATCGTCGACACCAATGTGAGCTT
TGGCACCGAAGTAATACTGGTTGCCCTTCTTGGTCTGATGCATTTCCGGGTCGCGTTTGCCGTCCTTGTTCTTGGTCGAACTGGGCGCATGAATCAGAGT
GGCATCGACGATGGTGCCTTGTCGCAGTGACAAGCCACGGTCGCCCAAATAGCCATTGATCACGCCGAGAATACCGGTGGCCAACTCATGCTTTTCCAGC
AGGCGACGGAAGTTGAGGATGGTGGTTTCATCCGGGATTCGCTCCAGGCTCAGACCGGAAAACTGGCGCAGGATCGTCGTCTCGTACAGCGCCTCTTCCA
TCGCCGGATCGCTGTAACCGAACCAGTTCTGCATTAGATGAATCCGCAGCATCGCCATCAGCGGATAGGCTGGACGGCCCCCTTCGCCCTTTGGGTAATG
AGGTTTGATCAGAGCAATCAAACCCTCCCAGGGTACGACCCGATCCATCTCTATCAGGAACAGCTCCTTGCGGGTCTGCTTGCGCTTACCGGCGTACTCG
GCATCGGCGAAGGTCATTTGTTTCATCATCGAAAAGCTCGGCGATTGGTGTCCGGGGATTTTGCCAAATCAGGAAGTCTTTTTCAGGATTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp324 aa771048+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTFADAEYAGKRKQTRKELFLIEMDRVVPWEGLIALIKPHYPKGEGGRPAYPLMAMLRIHLMQNWFGYSDPAMEEALYETTILRQFSGLSLERIPDETTI
LNFRRLLEKHELATGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAHIGVDDESGLVHSVVVTAANVADVTQ
VDKLLHGGENVVCADAGYTGVEKREEHEGRQVIWQIAARRSTYKKHGNRSALYKAIRKIERAKAQVRSKVEHPFRVIKRQFGYTKVRFRGLVKNTAQMVT
LFALSNIWMARRHLLSNAGEVRP

 

Blast result :
Comments
ISPa26 is 97% aa similar to ISPsy2
References
1] Evans and Segal (2007) Antimicrob. Agents. Chemother. 51(10)