ISPa26
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EU000222 | ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 1193 bp
Ends
IR Length : 12/18
IRL : GGAAGGTCTGAAGTAGCCGATGTTTTCCGGCTACTTCGCCATCGACACTT
IRR : GGAAATCCTGAAAAAGACTTCCTGATTTGGCAAAATCCCCGGACACCAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGCCATTGCA | CTGG | CGGTTTCCGC | 4 |
DNA sequence
GGAAGGTCTGAAGTAGCCGATGTTTTCCGGCTACTTCGCCATCGACACTTTCAAAAAACGGTAGCCGCTCAAATCCCGGTCAAACCTGCCGTCTATTTCA
GCCTTTTTTGCCGCTGCAAGCACCTCGCAGCAGTCACTTCACTCTTCACGGACGCACCTCTCCTGCATTGGAGAGCAAATGTCGACGCGCCATCCAAATG
TTCGACAGGGCGAACAGCGTCACCATCTGAGCAGTGTTTTTCACCAAGCCTCGGAAGCGCACTTTCGTATAACCAAACTGGCGCTTGATCACCCGAAATG
GATGCTCAACCTTGGAGCGAACCTGGGCCTTGGCTCTTTCGATCTTACGTATCGCTTTGTATAACGCGCTGCGGTTACCGTGCTTTTTGTAAGTGCTGCG
CCGGGCTGCAATCTGCCAGATGACTTGGCGCCCCTCATGCTCTTCACGCTTCTCTACACCGGTATAGCCCGCATCAGCGCAGACCACGTTCTCACCACCG
TGCAGCAGTTTGTCGACTTGGGTTACGTCCGCGACGTTGGCCGCAGTGACCACCACGCTGTGCACAAGCCCGGACTCATCGTCGACACCAATGTGAGCTT
TGGCACCGAAGTAATACTGGTTGCCCTTCTTGGTCTGATGCATTTCCGGGTCGCGTTTGCCGTCCTTGTTCTTGGTCGAACTGGGCGCATGAATCAGAGT
GGCATCGACGATGGTGCCTTGTCGCAGTGACAAGCCACGGTCGCCCAAATAGCCATTGATCACGCCGAGAATACCGGTGGCCAACTCATGCTTTTCCAGC
AGGCGACGGAAGTTGAGGATGGTGGTTTCATCCGGGATTCGCTCCAGGCTCAGACCGGAAAACTGGCGCAGGATCGTCGTCTCGTACAGCGCCTCTTCCA
TCGCCGGATCGCTGTAACCGAACCAGTTCTGCATTAGATGAATCCGCAGCATCGCCATCAGCGGATAGGCTGGACGGCCCCCTTCGCCCTTTGGGTAATG
AGGTTTGATCAGAGCAATCAAACCCTCCCAGGGTACGACCCGATCCATCTCTATCAGGAACAGCTCCTTGCGGGTCTGCTTGCGCTTACCGGCGTACTCG
GCATCGGCGAAGGTCATTTGTTTCATCATCGAAAAGCTCGGCGATTGGTGTCCGGGGATTTTGCCAAATCAGGAAGTCTTTTTCAGGATTTCC
GCCTTTTTTGCCGCTGCAAGCACCTCGCAGCAGTCACTTCACTCTTCACGGACGCACCTCTCCTGCATTGGAGAGCAAATGTCGACGCGCCATCCAAATG
TTCGACAGGGCGAACAGCGTCACCATCTGAGCAGTGTTTTTCACCAAGCCTCGGAAGCGCACTTTCGTATAACCAAACTGGCGCTTGATCACCCGAAATG
GATGCTCAACCTTGGAGCGAACCTGGGCCTTGGCTCTTTCGATCTTACGTATCGCTTTGTATAACGCGCTGCGGTTACCGTGCTTTTTGTAAGTGCTGCG
CCGGGCTGCAATCTGCCAGATGACTTGGCGCCCCTCATGCTCTTCACGCTTCTCTACACCGGTATAGCCCGCATCAGCGCAGACCACGTTCTCACCACCG
TGCAGCAGTTTGTCGACTTGGGTTACGTCCGCGACGTTGGCCGCAGTGACCACCACGCTGTGCACAAGCCCGGACTCATCGTCGACACCAATGTGAGCTT
TGGCACCGAAGTAATACTGGTTGCCCTTCTTGGTCTGATGCATTTCCGGGTCGCGTTTGCCGTCCTTGTTCTTGGTCGAACTGGGCGCATGAATCAGAGT
GGCATCGACGATGGTGCCTTGTCGCAGTGACAAGCCACGGTCGCCCAAATAGCCATTGATCACGCCGAGAATACCGGTGGCCAACTCATGCTTTTCCAGC
AGGCGACGGAAGTTGAGGATGGTGGTTTCATCCGGGATTCGCTCCAGGCTCAGACCGGAAAACTGGCGCAGGATCGTCGTCTCGTACAGCGCCTCTTCCA
TCGCCGGATCGCTGTAACCGAACCAGTTCTGCATTAGATGAATCCGCAGCATCGCCATCAGCGGATAGGCTGGACGGCCCCCTTCGCCCTTTGGGTAATG
AGGTTTGATCAGAGCAATCAAACCCTCCCAGGGTACGACCCGATCCATCTCTATCAGGAACAGCTCCTTGCGGGTCTGCTTGCGCTTACCGGCGTACTCG
GCATCGGCGAAGGTCATTTGTTTCATCATCGAAAAGCTCGGCGATTGGTGTCCGGGGATTTTGCCAAATCAGGAAGTCTTTTTCAGGATTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 324 aa | 77 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MTFADAEYAGKRKQTRKELFLIEMDRVVPWEGLIALIKPHYPKGEGGRPAYPLMAMLRIHLMQNWFGYSDPAMEEALYETTILRQFSGLSLERIPDETTI
LNFRRLLEKHELATGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAHIGVDDESGLVHSVVVTAANVADVTQ
VDKLLHGGENVVCADAGYTGVEKREEHEGRQVIWQIAARRSTYKKHGNRSALYKAIRKIERAKAQVRSKVEHPFRVIKRQFGYTKVRFRGLVKNTAQMVT
LFALSNIWMARRHLLSNAGEVRP
LNFRRLLEKHELATGILGVINGYLGDRGLSLRQGTIVDATLIHAPSSTKNKDGKRDPEMHQTKKGNQYYFGAKAHIGVDDESGLVHSVVVTAANVADVTQ
VDKLLHGGENVVCADAGYTGVEKREEHEGRQVIWQIAARRSTYKKHGNRSALYKAIRKIERAKAQVRSKVEHPFRVIKRQFGYTKVRFRGLVKNTAQMVT
LFALSNIWMARRHLLSNAGEVRP
Blast result :
Comments
ISPa26 is 97% aa similar to ISPsy2
References
1] Evans and Segal (2007) Antimicrob. Agents. Chemother. 51(10)