ISGme9

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007517 ND Geobacter metallireducens
Geobacter metallireducens GS-15
DNA section
IS Length : 1353 bp

Ends


IR Length : 40/48

IRL : TGTTGAGTGCCACGACATCGTGGACAGAAAAATGTGCCAGCACATCGTAG
IRR : TGTTGAGTGCCACGACATCGTGGACAACTTTTTGTGCCATGACATCGTGG

Insertion site


Left flankDirect repeatRight flankDR Length
CTGCAGCAGGTTGTAGGGAATAGAAAACATG6

DNA sequence

TGTTGAGTGCCACGACATCGTGGACAGAAAAATGTGCCAGCACATCGTAGACAAAGTTCTCTGACAATCGAATAGTCGCCACGGCATTCTGTGAACACCA
CATCAAACTCGGAGGTGTTCATGGAAGATAAAAACAAGCAGCTTCGGGTGTTGGCCGTTCAACGGTTCAGAAACGGCGAAACCCCGGAATCAATTTGCAC
ATCACTCGGCAAGTCTCGTTCCTGGCTATACAAATGGGTTGCTCGCCAGAATGGAGATGACCCTGTATGGAGTGACGAGCGATCCCGATGCCCACAATCC
ATGCCGAACCGTACAACGGCAGAGATTGAAGAAATCGTCAAAATGGTTCGCCTCAATCTCTACAACAAGGGCTTGTTCTGTGGTGCACAGGCCATCCTGT
GGGAGTTGGAGGACCTGGGTGTCAAGCCGTTGCCTTCTACCAGAACCATCAATCGGATTCTTGCAAGGAATGAACTGACACATCGGCGCACCGGCAAATA
CGAAGCCAAAGGGACGCTTTACCCAGTTCTGCCGTCAGCGTTGCCGAACCAGACGCACCAAGCTGATCTCGTTGGTCCATGCTATCTGACAGGGCCAATT
CGCTTCTACAGCCTGAATGTTGTCGATACAGCAACCGTCAGGTGCGGGTTGCACTCATCTCGGTCCAAAGCTGGTCAGATGGTCATTGACGGTTTGTGGG
AAGTCTGGAAACGACTAGGCATCCCAGAACGACTCCAGGTTGACAATGCCATGTCATTCTTCGGCAGCCCGACACATCCCCGCGGCATGGGACCACTGAT
TCGTCTTTGCCTGCATAACGATGTCGAACCATGGTTCATACCCATGGCTGAACCATGGAGAAACGGCATGATCGAAAAGTTCAACGACCGGTACCAACAA
CGGTTCCTCGGCAAAGTCATCATGACTTCAGAAGAGGAATTGAAAGTCGGCTCACTGACCTTTGAGCAGCGACACAACAGCAAGTATCGCTACAGCAAGC
TAAAGGGGAGTACGCCGCTGAAAGCACTGGCCACCTCGCATGTGCAACTGAGGTTCCCGACTGAGGATGAACCTCCCAGGCATCGCCTGAAGAAGCCAGA
AGTCGGAAAATATCATGCTGTCCGCCTTATCCGCAGTGACCTGAAGCTGAACATCTTCGGCGAATGCTTCTCGGTTCCACCGGAGACAGCGCTTGAATAC
GTGGTGGCGACTATCGATGTCAAAGAACAGAAACTGAAACTCTTCCTGGATAAAAATCAGGTCGAGGAATTCGATTACAAACTGCGGTGATTCAGATGAG
TGTCCACGATGTCATGGCACAAAAAGTTGTCCACGATGTCGTGGCACTCAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1170 bp389 aa1211290+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEDKNKQLRVLAVQRFRNGETPESICTSLGKSRSWLYKWVARQNGDDPVWSDERSRCPQSMPNRTTAEIEEIVKMVRLNLYNKGLFCGAQAILWELEDLG
VKPLPSTRTINRILARNELTHRRTGKYEAKGTLYPVLPSALPNQTHQADLVGPCYLTGPIRFYSLNVVDTATVRCGLHSSRSKAGQMVIDGLWEVWKRLG
IPERLQVDNAMSFFGSPTHPRGMGPLIRLCLHNDVEPWFIPMAEPWRNGMIEKFNDRYQQRFLGKVIMTSEEELKVGSLTFEQRHNSKYRYSKLKGSTPL
KALATSHVQLRFPTEDEPPRHRLKKPEVGKYHAVRLIRSDLKLNIFGECFSVPPETALEYVVATIDVKEQKLKLFLDKNQVEEFDYKLR

 

Blast result :
Comments
ISGme9 is 40% aa similar to ISSco2. There are 6 copies on chromosome.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank
2] Muktak Aklujkar (2007) Direct submission