ISGme9
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007517 | ND | Geobacter metallireducens | Geobacter metallireducens GS-15 |
DNA section
IS Length : 1353 bp
Ends
IR Length : 40/48
IRL : TGTTGAGTGCCACGACATCGTGGACAGAAAAATGTGCCAGCACATCGTAG
IRR : TGTTGAGTGCCACGACATCGTGGACAACTTTTTGTGCCATGACATCGTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGCAGCAGGT | TGTAGG | GAATAGAAAACATG | 6 |
DNA sequence
TGTTGAGTGCCACGACATCGTGGACAGAAAAATGTGCCAGCACATCGTAGACAAAGTTCTCTGACAATCGAATAGTCGCCACGGCATTCTGTGAACACCA
CATCAAACTCGGAGGTGTTCATGGAAGATAAAAACAAGCAGCTTCGGGTGTTGGCCGTTCAACGGTTCAGAAACGGCGAAACCCCGGAATCAATTTGCAC
ATCACTCGGCAAGTCTCGTTCCTGGCTATACAAATGGGTTGCTCGCCAGAATGGAGATGACCCTGTATGGAGTGACGAGCGATCCCGATGCCCACAATCC
ATGCCGAACCGTACAACGGCAGAGATTGAAGAAATCGTCAAAATGGTTCGCCTCAATCTCTACAACAAGGGCTTGTTCTGTGGTGCACAGGCCATCCTGT
GGGAGTTGGAGGACCTGGGTGTCAAGCCGTTGCCTTCTACCAGAACCATCAATCGGATTCTTGCAAGGAATGAACTGACACATCGGCGCACCGGCAAATA
CGAAGCCAAAGGGACGCTTTACCCAGTTCTGCCGTCAGCGTTGCCGAACCAGACGCACCAAGCTGATCTCGTTGGTCCATGCTATCTGACAGGGCCAATT
CGCTTCTACAGCCTGAATGTTGTCGATACAGCAACCGTCAGGTGCGGGTTGCACTCATCTCGGTCCAAAGCTGGTCAGATGGTCATTGACGGTTTGTGGG
AAGTCTGGAAACGACTAGGCATCCCAGAACGACTCCAGGTTGACAATGCCATGTCATTCTTCGGCAGCCCGACACATCCCCGCGGCATGGGACCACTGAT
TCGTCTTTGCCTGCATAACGATGTCGAACCATGGTTCATACCCATGGCTGAACCATGGAGAAACGGCATGATCGAAAAGTTCAACGACCGGTACCAACAA
CGGTTCCTCGGCAAAGTCATCATGACTTCAGAAGAGGAATTGAAAGTCGGCTCACTGACCTTTGAGCAGCGACACAACAGCAAGTATCGCTACAGCAAGC
TAAAGGGGAGTACGCCGCTGAAAGCACTGGCCACCTCGCATGTGCAACTGAGGTTCCCGACTGAGGATGAACCTCCCAGGCATCGCCTGAAGAAGCCAGA
AGTCGGAAAATATCATGCTGTCCGCCTTATCCGCAGTGACCTGAAGCTGAACATCTTCGGCGAATGCTTCTCGGTTCCACCGGAGACAGCGCTTGAATAC
GTGGTGGCGACTATCGATGTCAAAGAACAGAAACTGAAACTCTTCCTGGATAAAAATCAGGTCGAGGAATTCGATTACAAACTGCGGTGATTCAGATGAG
TGTCCACGATGTCATGGCACAAAAAGTTGTCCACGATGTCGTGGCACTCAACA
CATCAAACTCGGAGGTGTTCATGGAAGATAAAAACAAGCAGCTTCGGGTGTTGGCCGTTCAACGGTTCAGAAACGGCGAAACCCCGGAATCAATTTGCAC
ATCACTCGGCAAGTCTCGTTCCTGGCTATACAAATGGGTTGCTCGCCAGAATGGAGATGACCCTGTATGGAGTGACGAGCGATCCCGATGCCCACAATCC
ATGCCGAACCGTACAACGGCAGAGATTGAAGAAATCGTCAAAATGGTTCGCCTCAATCTCTACAACAAGGGCTTGTTCTGTGGTGCACAGGCCATCCTGT
GGGAGTTGGAGGACCTGGGTGTCAAGCCGTTGCCTTCTACCAGAACCATCAATCGGATTCTTGCAAGGAATGAACTGACACATCGGCGCACCGGCAAATA
CGAAGCCAAAGGGACGCTTTACCCAGTTCTGCCGTCAGCGTTGCCGAACCAGACGCACCAAGCTGATCTCGTTGGTCCATGCTATCTGACAGGGCCAATT
CGCTTCTACAGCCTGAATGTTGTCGATACAGCAACCGTCAGGTGCGGGTTGCACTCATCTCGGTCCAAAGCTGGTCAGATGGTCATTGACGGTTTGTGGG
AAGTCTGGAAACGACTAGGCATCCCAGAACGACTCCAGGTTGACAATGCCATGTCATTCTTCGGCAGCCCGACACATCCCCGCGGCATGGGACCACTGAT
TCGTCTTTGCCTGCATAACGATGTCGAACCATGGTTCATACCCATGGCTGAACCATGGAGAAACGGCATGATCGAAAAGTTCAACGACCGGTACCAACAA
CGGTTCCTCGGCAAAGTCATCATGACTTCAGAAGAGGAATTGAAAGTCGGCTCACTGACCTTTGAGCAGCGACACAACAGCAAGTATCGCTACAGCAAGC
TAAAGGGGAGTACGCCGCTGAAAGCACTGGCCACCTCGCATGTGCAACTGAGGTTCCCGACTGAGGATGAACCTCCCAGGCATCGCCTGAAGAAGCCAGA
AGTCGGAAAATATCATGCTGTCCGCCTTATCCGCAGTGACCTGAAGCTGAACATCTTCGGCGAATGCTTCTCGGTTCCACCGGAGACAGCGCTTGAATAC
GTGGTGGCGACTATCGATGTCAAAGAACAGAAACTGAAACTCTTCCTGGATAAAAATCAGGTCGAGGAATTCGATTACAAACTGCGGTGATTCAGATGAG
TGTCCACGATGTCATGGCACAAAAAGTTGTCCACGATGTCGTGGCACTCAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 389 aa | 121 | 1290 | + | No |
Chemistry : DDE
ORF sequence :
MEDKNKQLRVLAVQRFRNGETPESICTSLGKSRSWLYKWVARQNGDDPVWSDERSRCPQSMPNRTTAEIEEIVKMVRLNLYNKGLFCGAQAILWELEDLG
VKPLPSTRTINRILARNELTHRRTGKYEAKGTLYPVLPSALPNQTHQADLVGPCYLTGPIRFYSLNVVDTATVRCGLHSSRSKAGQMVIDGLWEVWKRLG
IPERLQVDNAMSFFGSPTHPRGMGPLIRLCLHNDVEPWFIPMAEPWRNGMIEKFNDRYQQRFLGKVIMTSEEELKVGSLTFEQRHNSKYRYSKLKGSTPL
KALATSHVQLRFPTEDEPPRHRLKKPEVGKYHAVRLIRSDLKLNIFGECFSVPPETALEYVVATIDVKEQKLKLFLDKNQVEEFDYKLR
VKPLPSTRTINRILARNELTHRRTGKYEAKGTLYPVLPSALPNQTHQADLVGPCYLTGPIRFYSLNVVDTATVRCGLHSSRSKAGQMVIDGLWEVWKRLG
IPERLQVDNAMSFFGSPTHPRGMGPLIRLCLHNDVEPWFIPMAEPWRNGMIEKFNDRYQQRFLGKVIMTSEEELKVGSLTFEQRHNSKYRYSKLKGSTPL
KALATSHVQLRFPTEDEPPRHRLKKPEVGKYHAVRLIRSDLKLNIFGECFSVPPETALEYVVATIDVKEQKLKLFLDKNQVEEFDYKLR
Blast result :
Comments
ISGme9 is 40% aa similar to ISSco2. There are 6 copies on chromosome.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina,T., Hammon,N., Israni,S., Pitluck,S., Di Bartolo,G., Chain,P., Schmutz,J., Larimer,F., Land,M., Kyrpides,N., Ivanova,N. and Richardson,P. (2005) Direct submission GenBank
2] Muktak Aklujkar (2007) Direct submission
2] Muktak Aklujkar (2007) Direct submission