ISSod24
- Family IS3
- Group IS3
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE014300 | ND | Shewanella oneidensis | Shewanella oneidensis MR-1 |
DNA section
IS Length : 1034 bp
Ends
IR Length : 25/35
IRL : TGATCTGATCCAATACTTTTGGACACCACGCTAAGTGAGTAAAATGACTT
IRR : TGATCTGATCCGTTAACTCTGGACACTTAACTAAGCACTATGTGTCAGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCACGATAA | GTGTCCAACT | 0 |
DNA sequence
TGATCTGATCCAATACTTTTGGACACCACGCTAAGTGAGTAAAATGACTTAACGAGGTGAATATGACAACCCAAAAGACCCGCAAGACCCATACTGCTGA
ATTTAAAGCTGAAGCCATGAAGTTAGTTGAACGTGTCGGTGTTGCTGAAGCGGCCAGGCAGCTCAAAATCTACGAATCACAACTTTATAACTGGCGCTCT
GCCATTGAGAAGAAATCTACAACCAGTCATCGCGAAGTGGGTATTATGCGTGGCAAAAATTCAAGCAAAGAGTCGAGTGCACACTTGCTCAAACAGCACA
ACCGTGATGAGCAAATCAAAGCTATTTTTGTCCAGAGCAAGGAGCGTTCAGGCGCTCGGCGTATTCAAGTCGACCTCGCCGAAGATGGAGAATACGCGGA
TCTGAAAAAGCATGACAAGGCAGAATTTAGTGGCTAAAGCAGCGCGTAAATTCAAAACCACAACCGACAGCGCTCACCAGCTCACAGTCGCCCCAAACCT
GCTGGAGCAGAACTTCGATGCCACCGGCCCGAACCAAAAATGGGGCGGAGCTGATCACGAGCGAAGGTTGGCTGTATCTGGCGGTGATTATCGATTTGTA
CTCGCGCGCCATGATTGACTGGTCGATGAGTAATCGCATGACGGCTCAGTTGGCTTGTGACGCGCTGACAATGGCGTTGTTTCGTCGAGGGTTTCCAAAA
AACGTAATCGTTCATAGTGACCGCGGCAGCCAATATTGTTCACATGCGTATCGGAATCTGATCAAAAAAACAACAACTTACTCAAAGCGTGAGCCGCAAA
GCTTGCTGCTTGGACACTGCCTGTGCAGAGAGCTTCTTCCATTCACTGAAGGTTGAGGCTATTTAGTACGAGCCAATCATGGACCGGGAAAACATGAAAC
AAGCCGTATTTGAGTACATAGAAGTTGATTACAACAAAACCAGAAGGCATAGTTCACTTGGCTATTTAAGCCCTGAGAATTTTGAACTGACACATAGTGC
TTAGTTAAGTGTCCAGAGTTAACGGATCAGATCA
ATTTAAAGCTGAAGCCATGAAGTTAGTTGAACGTGTCGGTGTTGCTGAAGCGGCCAGGCAGCTCAAAATCTACGAATCACAACTTTATAACTGGCGCTCT
GCCATTGAGAAGAAATCTACAACCAGTCATCGCGAAGTGGGTATTATGCGTGGCAAAAATTCAAGCAAAGAGTCGAGTGCACACTTGCTCAAACAGCACA
ACCGTGATGAGCAAATCAAAGCTATTTTTGTCCAGAGCAAGGAGCGTTCAGGCGCTCGGCGTATTCAAGTCGACCTCGCCGAAGATGGAGAATACGCGGA
TCTGAAAAAGCATGACAAGGCAGAATTTAGTGGCTAAAGCAGCGCGTAAATTCAAAACCACAACCGACAGCGCTCACCAGCTCACAGTCGCCCCAAACCT
GCTGGAGCAGAACTTCGATGCCACCGGCCCGAACCAAAAATGGGGCGGAGCTGATCACGAGCGAAGGTTGGCTGTATCTGGCGGTGATTATCGATTTGTA
CTCGCGCGCCATGATTGACTGGTCGATGAGTAATCGCATGACGGCTCAGTTGGCTTGTGACGCGCTGACAATGGCGTTGTTTCGTCGAGGGTTTCCAAAA
AACGTAATCGTTCATAGTGACCGCGGCAGCCAATATTGTTCACATGCGTATCGGAATCTGATCAAAAAAACAACAACTTACTCAAAGCGTGAGCCGCAAA
GCTTGCTGCTTGGACACTGCCTGTGCAGAGAGCTTCTTCCATTCACTGAAGGTTGAGGCTATTTAGTACGAGCCAATCATGGACCGGGAAAACATGAAAC
AAGCCGTATTTGAGTACATAGAAGTTGATTACAACAAAACCAGAAGGCATAGTTCACTTGGCTATTTAAGCCCTGAGAATTTTGAACTGACACATAGTGC
TTAGTTAAGTGTCCAGAGTTAACGGATCAGATCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 312 aa | 63 | 1004 | + | No |
Chemistry : DDE
ORF sequence :
MTTQKTRKTHTAEFKAEAMKLVERVGVAEAARQLKIYESQLYNWRSAIEKKSTTSHREVGIMRGKNSSKESSAHLLKQHNRDEQIKAIFVQSKERSGARR
IQVDLAEDGEYADLKSMTRQNLVAKAARKFKTTTDSAHQLTVAPNLLEQNFDATGPNQKWGGLITSEGWLYLAVIIDLYSRAMIDWSMSNRMTAQLACDA
LTMALFRRGFPKNVIVHSDRGSQYCSHAYRNLIKKQQLTQSVSRKACCLDTACAESFFHSLKVEAIXYEPIMDRENMKQAVFEYIEVDYNKTRRHSSLGY
LSPENFELTHSA
IQVDLAEDGEYADLKSMTRQNLVAKAARKFKTTTDSAHQLTVAPNLLEQNFDATGPNQKWGGLITSEGWLYLAVIIDLYSRAMIDWSMSNRMTAQLACDA
LTMALFRRGFPKNVIVHSDRGSQYCSHAYRNLIKKQQLTQSVSRKACCLDTACAESFFHSLKVEAIXYEPIMDRENMKQAVFEYIEVDYNKTRRHSSLGY
LSPENFELTHSA
Blast result :
Comments
There is one copy of ISSod24 on the plasmid. The transpoase encoded within ISSod24 is degenerate. The protein sequence is deduced from the predicted positions of frameshifting and read through of in frame stop codons. The transposase has 67% ID with ISShes1 from Shewanella sp. strain W3-18-1.
References
1] Romine, M (2007) Direct submission.