ISSod24

  • Family IS3
  • Group IS3
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE014300 ND Shewanella oneidensis
Shewanella oneidensis MR-1
DNA section
IS Length : 1034 bp

Ends


IR Length : 25/35

IRL : TGATCTGATCCAATACTTTTGGACACCACGCTAAGTGAGTAAAATGACTT
IRR : TGATCTGATCCGTTAACTCTGGACACTTAACTAAGCACTATGTGTCAGTT

Insertion site


Left flankDirect repeatRight flankDR Length
TGCACGATAAGTGTCCAACT0

DNA sequence

TGATCTGATCCAATACTTTTGGACACCACGCTAAGTGAGTAAAATGACTTAACGAGGTGAATATGACAACCCAAAAGACCCGCAAGACCCATACTGCTGA
ATTTAAAGCTGAAGCCATGAAGTTAGTTGAACGTGTCGGTGTTGCTGAAGCGGCCAGGCAGCTCAAAATCTACGAATCACAACTTTATAACTGGCGCTCT
GCCATTGAGAAGAAATCTACAACCAGTCATCGCGAAGTGGGTATTATGCGTGGCAAAAATTCAAGCAAAGAGTCGAGTGCACACTTGCTCAAACAGCACA
ACCGTGATGAGCAAATCAAAGCTATTTTTGTCCAGAGCAAGGAGCGTTCAGGCGCTCGGCGTATTCAAGTCGACCTCGCCGAAGATGGAGAATACGCGGA
TCTGAAAAAGCATGACAAGGCAGAATTTAGTGGCTAAAGCAGCGCGTAAATTCAAAACCACAACCGACAGCGCTCACCAGCTCACAGTCGCCCCAAACCT
GCTGGAGCAGAACTTCGATGCCACCGGCCCGAACCAAAAATGGGGCGGAGCTGATCACGAGCGAAGGTTGGCTGTATCTGGCGGTGATTATCGATTTGTA
CTCGCGCGCCATGATTGACTGGTCGATGAGTAATCGCATGACGGCTCAGTTGGCTTGTGACGCGCTGACAATGGCGTTGTTTCGTCGAGGGTTTCCAAAA
AACGTAATCGTTCATAGTGACCGCGGCAGCCAATATTGTTCACATGCGTATCGGAATCTGATCAAAAAAACAACAACTTACTCAAAGCGTGAGCCGCAAA
GCTTGCTGCTTGGACACTGCCTGTGCAGAGAGCTTCTTCCATTCACTGAAGGTTGAGGCTATTTAGTACGAGCCAATCATGGACCGGGAAAACATGAAAC
AAGCCGTATTTGAGTACATAGAAGTTGATTACAACAAAACCAGAAGGCATAGTTCACTTGGCTATTTAAGCCCTGAGAATTTTGAACTGACACATAGTGC
TTAGTTAAGTGTCCAGAGTTAACGGATCAGATCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp312 aa631004+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTTQKTRKTHTAEFKAEAMKLVERVGVAEAARQLKIYESQLYNWRSAIEKKSTTSHREVGIMRGKNSSKESSAHLLKQHNRDEQIKAIFVQSKERSGARR
IQVDLAEDGEYADLKSMTRQNLVAKAARKFKTTTDSAHQLTVAPNLLEQNFDATGPNQKWGGLITSEGWLYLAVIIDLYSRAMIDWSMSNRMTAQLACDA
LTMALFRRGFPKNVIVHSDRGSQYCSHAYRNLIKKQQLTQSVSRKACCLDTACAESFFHSLKVEAIXYEPIMDRENMKQAVFEYIEVDYNKTRRHSSLGY
LSPENFELTHSA

 

Blast result :
Comments
There is one copy of ISSod24 on the plasmid. The transpoase encoded within ISSod24 is degenerate. The protein sequence is deduced from the predicted positions of frameshifting and read through of in frame stop codons. The transposase has 67% ID with ISShes1 from Shewanella sp. strain W3-18-1.
References
1] Romine, M (2007) Direct submission.