ISSau8

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s) ISRX
Accession numberTranspositionOriginHost
NC_007622 ND Staphylococcus aureus
Staphylococcus aureus RF122
DNA section
IS Length : 1498 bp

Ends


IR Length : 19/24

IRL : GGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTG
IRR : GGCTCTATGTCAAATTGGACTGATGCGTTCAATATCGGAAGTTAGGCAAC

Insertion site


Left flankDirect repeatRight flankDR Length
AACGTTACTGAAGATTTTTCAGATTTTTATAATTATGCTTCAAAT7
CAAGCCATTTTTCTTTGTGTTAACTTTTTACTATGTAACTTTAG8

DNA sequence

GGTTCTATAATAAATCGGACTGATAGAAAAAGTTTTTTACTTTTCATCTGTCCGATTTTTTGATTTTGAATATAAAAAAAGCGCAATTATCTCTATAATT
AAAAGTGCCTAAACAAATAACTAAAGGAGATAATGCGCCTATGAACAATGTTATACTAAATACCTTTGATTTGAAAGATAAAAATATTATTTTTGACGGT
AAACTTGAGAAAATTGAGTATAAAGGGAGAAAGTGTTTCTTTTATTACGCAAAACTAATCTATACACCTGAGGTGTGCCCAAACTGCAATTGTAAAAATA
TTAATGGTAATTTAATCAAAAATGGGTCTAAGACTTCTAGAATCACTATGCCTAAAATCTCCGAATATCCAACTTATATCATGTTGCGTAAGCAACGTTT
TAAATGTAAAACGTGCGAACGATACTTTACAGCTGAAACACCTGAAGTTGATAAATACTGTTTTATATCAAAAAAAACACGATCAGCTGTACTTAATAAA
GCAGCAGAAATTCGTTCTGAAAAATCTATAGCGAAATCCTGCTCTGTGTCAGCTACTACAGTTTCTCGTATCATTGATGAAGCCGCTCAATCGCTTCATC
AATCGCCGTATTCTGCACTTCCTGAACATATCATGATGGATGAATTTAAAAGTGTTAAAAATGTTTCTGGGAAAATGAGTTTTATATACGCTGATGCACA
AACGCATCATATTATTGATATTGTTGAAGATCGTAGATTAAGTGAGTTGAAAAAGTATTTTTATCGTTTTTCACTTAAAGCTAGAAAACGTGTGAAAACA
GTTTCGATTGATATGCATGAAGGCTATATGACATTGATTAAAGAGATGTTTCCGAACGCTAAAATAGTCATCGATCGATTCCATATTGTTCAATTATTAA
ATCGTGCTTTAAATGGTATTCGAGTCACTGTTATGAATGAATTAAGAGCGACGAATCAACCTTTATATAATAAGTTTAAAAGATATGCGAAATTACTATT
AAAACCTGAAGAAGATTTAGAGGCATTTGAATATCGTAAAGTAGCTTTATTTAAAGAATGGAAGACACAAAAGGGTATCGTCAAGTATTTATTAGATCAA
GATGACTCGTTAAATGACGCCTACCAATATATCAATCAGCTACGATTCAAACTTAAACATAATGATTATGGAGGCTTTATTCACGAATTAAAACATATGC
CATTATCCCAAACGCATTCAGTTGTCCAACGAGCAATTAAGACACTTAACAAACATGTATACTTTATAAAAAATACATTTGATTATTACAATTTATCAAA
TGGTCCTTTAGAAGGTATAAATAACAAAATAAAATTAATTAAACGTACATCTTTTGGTTATGGAAGTTACAATCATTTGCGAAATCGAATATTATTATGT
TCAAAACTTTACGCTCCAAAAAGTAAAAAGGAAGTTAAGCAATGTTTAGTTGCCTAACTTCCGATATTGAACGCATCAGTCCAATTTGACATAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1317 bp438 aa1411457+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MNNVILNTFDLKDKNIIFDGKLEKIEYKGRKCFFYYAKLIYTPEVCPNCNCKNINGNLIKNGSKTSRITMPKISEYPTYIMLRKQRFKCKTCERYFTAET
PEVDKYCFISKKTRSAVLNKAAEIRSEKSIAKSCSVSATTVSRIIDEAAQSLHQSPYSALPEHIMMDEFKSVKNVSGKMSFIYADAQTHHIIDIVEDRRL
SELKKYFYRFSLKARKRVKTVSIDMHEGYMTLIKEMFPNAKIVIDRFHIVQLLNRALNGIRVTVMNELRATNQPLYNKFKRYAKLLLKPEEDLEAFEYRK
VALFKEWKTQKGIVKYLLDQDDSLNDAYQYINQLRFKLKHNDYGGFIHELKHMPLSQTHSVVQRAIKTLNKHVYFIKNTFDYYNLSNGPLEGINNKIKLI
KRTSFGYGSYNHLRNRILLCSKLYAPKSKKEVKQCLVA

 

Blast result :
Comments
ISSau8 is 59% aa similar to IS1181. There are 9 copies in the genome of Staphylococcus aureus RF122.
References
1] Herron-Olson,L., Musser,J.M. and Kapur,V.(2005) Direct submission GenBank