ISSod20

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AE014299 ND Shewanella oneidensis
Shewanella oneidensis MR-1
DNA section
IS Length : 995 bp

Ends


IR Length : 15/20

IRL : ACCTGAACTAGGGATAAGAAATGTTGAACTAATAGCCCTCCAAGTGATCG
IRR : ACCTGAGATCGGTTTAACGAGCCATAACTGCAATAGCATTAAACTCCGCG

Insertion site


Left flankDirect repeatRight flankDR Length
GGCTTATTTATAATTAATTG0

DNA sequence

ACCTGAACTAGGGATAAGAAATGTTGAACTAATAGCCCTCCAAGTGATCGGATCTTTCGACCAAGAAAAGCCCCATCACACCGGAGGGCTTTTGCATAAA
TGAGTGGAAGTGTTTTGCGATGTCGATGATTTTTGCGCTGTTTTTATTCCAGAATGGGAAAAAACGCTGTTAACCGATGGCACACGCAAGCGTCAACGTG
CTGGCCGTATGACGATGAGCGAAGTGATGACCATCATCATACTTTTTCAGATGTCTCATCACCGTGATTTCAAGAACTTTTACATTGGCTACTTGGCTCA
TTTCTATAAATCCGCTTTTCCCAACTTACTCAGCTATACCCGCTTTCTTGAGGTGATGCCGACAGCGTTAGTGCCGCTTTGCAGTGACTTTACCTGTCTC
AAAAGTGAACCCACTGGCACTGAATTTGTTGATTCAACCCGCATCAAAGTGTGTCATAACCTACGTATTCATCGCCATAAAACCTTGGCGGGGCTGGCGT
GCAGAGGTAAAGGCACCATGGGGTGGTTCTATGGCTTTAAGCTGCATTTGATTGTGAATCATCAAGGCGGAATAGTGGCGGCCAAAGTGACCCCAGCGAA
TGTACATGACACAAAACCGATGAATGAGATGGTGCGCAGTGATATGGATAAACTCTATGCAGATAAAGGGTTTATCAGTAAAGCGCTGTCCAGTGAATTG
CAGGAAAAAGGCGTCACACTGGTAACAAATGTGCGTAAGAATATGAAAGAAAAGGTAATGTCGTTATGGGATAGAGCAATGTTGTCGAGACGTTTCATCA
TAGAAACCATCAACGACCAGTTAAAAAATATCTCTCAAATAGAGCACTCTAGACACCGCAGCGGGCATGGTTTTATGCTCAATATGATTGCGGGGCTCAT
CGCCTATCAATTGAAAGACAATAAGCCACAATTGAACATCACTAGCGCGGAGTTTAATGCTATTGCAGTTATGGCTCGTTAAACCGATCTCAGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
879 bp292 aa104982+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MEVFCDVDDFCAVFIPEWEKTLLTDGTRKRQRAGRMTMSEVMTIIILFQMSHHRDFKNFYIGYLAHFYKSAFPNLLSYTRFLEVMPTALVPLCSDFTCLK
SEPTGTEFVDSTRIKVCHNLRIHRHKTLAGLACRGKGTMGWFYGFKLHLIVNHQGGIVAAKVTPANVHDTKPMNEMVRSDMDKLYADKGFISKALSSELQ
EKGVTLVTNVRKNMKEKVMSLWDRAMLSRRFIIETINDQLKNISQIEHSRHRSGHGFMLNMIAGLIAYQLKDNKPQLNITSAEFNAIAVMAR

 

Blast result :
Comments
There is one copy of the IS element on the chromosome. The transpoase encoded in it has 57% identity to ISPlu6.
References
1] Margie Romine (2007) Direct submission.