ISSod20
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AE014299 | ND | Shewanella oneidensis | Shewanella oneidensis MR-1 |
DNA section
IS Length : 995 bp
Ends
IR Length : 15/20
IRL : ACCTGAACTAGGGATAAGAAATGTTGAACTAATAGCCCTCCAAGTGATCG
IRR : ACCTGAGATCGGTTTAACGAGCCATAACTGCAATAGCATTAAACTCCGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCTTATTTA | TAATTAATTG | 0 |
DNA sequence
ACCTGAACTAGGGATAAGAAATGTTGAACTAATAGCCCTCCAAGTGATCGGATCTTTCGACCAAGAAAAGCCCCATCACACCGGAGGGCTTTTGCATAAA
TGAGTGGAAGTGTTTTGCGATGTCGATGATTTTTGCGCTGTTTTTATTCCAGAATGGGAAAAAACGCTGTTAACCGATGGCACACGCAAGCGTCAACGTG
CTGGCCGTATGACGATGAGCGAAGTGATGACCATCATCATACTTTTTCAGATGTCTCATCACCGTGATTTCAAGAACTTTTACATTGGCTACTTGGCTCA
TTTCTATAAATCCGCTTTTCCCAACTTACTCAGCTATACCCGCTTTCTTGAGGTGATGCCGACAGCGTTAGTGCCGCTTTGCAGTGACTTTACCTGTCTC
AAAAGTGAACCCACTGGCACTGAATTTGTTGATTCAACCCGCATCAAAGTGTGTCATAACCTACGTATTCATCGCCATAAAACCTTGGCGGGGCTGGCGT
GCAGAGGTAAAGGCACCATGGGGTGGTTCTATGGCTTTAAGCTGCATTTGATTGTGAATCATCAAGGCGGAATAGTGGCGGCCAAAGTGACCCCAGCGAA
TGTACATGACACAAAACCGATGAATGAGATGGTGCGCAGTGATATGGATAAACTCTATGCAGATAAAGGGTTTATCAGTAAAGCGCTGTCCAGTGAATTG
CAGGAAAAAGGCGTCACACTGGTAACAAATGTGCGTAAGAATATGAAAGAAAAGGTAATGTCGTTATGGGATAGAGCAATGTTGTCGAGACGTTTCATCA
TAGAAACCATCAACGACCAGTTAAAAAATATCTCTCAAATAGAGCACTCTAGACACCGCAGCGGGCATGGTTTTATGCTCAATATGATTGCGGGGCTCAT
CGCCTATCAATTGAAAGACAATAAGCCACAATTGAACATCACTAGCGCGGAGTTTAATGCTATTGCAGTTATGGCTCGTTAAACCGATCTCAGGT
TGAGTGGAAGTGTTTTGCGATGTCGATGATTTTTGCGCTGTTTTTATTCCAGAATGGGAAAAAACGCTGTTAACCGATGGCACACGCAAGCGTCAACGTG
CTGGCCGTATGACGATGAGCGAAGTGATGACCATCATCATACTTTTTCAGATGTCTCATCACCGTGATTTCAAGAACTTTTACATTGGCTACTTGGCTCA
TTTCTATAAATCCGCTTTTCCCAACTTACTCAGCTATACCCGCTTTCTTGAGGTGATGCCGACAGCGTTAGTGCCGCTTTGCAGTGACTTTACCTGTCTC
AAAAGTGAACCCACTGGCACTGAATTTGTTGATTCAACCCGCATCAAAGTGTGTCATAACCTACGTATTCATCGCCATAAAACCTTGGCGGGGCTGGCGT
GCAGAGGTAAAGGCACCATGGGGTGGTTCTATGGCTTTAAGCTGCATTTGATTGTGAATCATCAAGGCGGAATAGTGGCGGCCAAAGTGACCCCAGCGAA
TGTACATGACACAAAACCGATGAATGAGATGGTGCGCAGTGATATGGATAAACTCTATGCAGATAAAGGGTTTATCAGTAAAGCGCTGTCCAGTGAATTG
CAGGAAAAAGGCGTCACACTGGTAACAAATGTGCGTAAGAATATGAAAGAAAAGGTAATGTCGTTATGGGATAGAGCAATGTTGTCGAGACGTTTCATCA
TAGAAACCATCAACGACCAGTTAAAAAATATCTCTCAAATAGAGCACTCTAGACACCGCAGCGGGCATGGTTTTATGCTCAATATGATTGCGGGGCTCAT
CGCCTATCAATTGAAAGACAATAAGCCACAATTGAACATCACTAGCGCGGAGTTTAATGCTATTGCAGTTATGGCTCGTTAAACCGATCTCAGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
879 bp | 292 aa | 104 | 982 | + | No |
Chemistry : DDE
ORF sequence :
MEVFCDVDDFCAVFIPEWEKTLLTDGTRKRQRAGRMTMSEVMTIIILFQMSHHRDFKNFYIGYLAHFYKSAFPNLLSYTRFLEVMPTALVPLCSDFTCLK
SEPTGTEFVDSTRIKVCHNLRIHRHKTLAGLACRGKGTMGWFYGFKLHLIVNHQGGIVAAKVTPANVHDTKPMNEMVRSDMDKLYADKGFISKALSSELQ
EKGVTLVTNVRKNMKEKVMSLWDRAMLSRRFIIETINDQLKNISQIEHSRHRSGHGFMLNMIAGLIAYQLKDNKPQLNITSAEFNAIAVMAR
SEPTGTEFVDSTRIKVCHNLRIHRHKTLAGLACRGKGTMGWFYGFKLHLIVNHQGGIVAAKVTPANVHDTKPMNEMVRSDMDKLYADKGFISKALSSELQ
EKGVTLVTNVRKNMKEKVMSLWDRAMLSRRFIIETINDQLKNISQIEHSRHRSGHGFMLNMIAGLIAYQLKDNKPQLNITSAEFNAIAVMAR
Blast result :
Comments
There is one copy of the IS element on the chromosome. The transpoase encoded in it has 57% identity to ISPlu6.
References
1] Margie Romine (2007) Direct submission.