ISMrsp2
- Family IS1595
- Group IS1595
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAXY01000003.1 | ND | Marinobacter sp. | Marinobacter sp. ELB17 |
DNA section
IS Length : 1027 bp
Ends
IR Length : 19/25
IRL : CCTGATTACTCACGTTAATCAGCCACGCTGCCGCCATTCTGGCATATACT
IRR : CCTGATTACGCATAAGAGTCAGCCATCTTTAGCAGCCTATAGGGCATAGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACTTTTGGGGCT | TAAGTTGA | TGACATTGGGACG | 8 |
DNA sequence
CCTGATTACTCACGTTAATCAGCCACGCTGCCGCCATTCTGGCATATACTGATGTTATATACAGTACAGGAGGCAATCTCATGGCACGTAACCCAATCCA
GTTCCAGCCCGGCCTGTCGTTGCCGGCTTTTCTCAAGCAATACGGCACAGAAGCACAGTGCCAGGAAGCCCTTTTCCAGCACCGCTGGCCCAAGGGATTT
GTGTGCCCTGACTGCGGCAATGCTACCGGCTGCCGGCTATCGAGGGGGCATTACCAGTGCCATCGCTGTCACCATCAGACGTCACTGACCGCCGGCACTA
TCTTTCATGCGACTCACCTGCCGTTGACCACCTGGTTCCTGGCCATTTATCTGCTGACCCAGCGTAAGAGCGGTCTCTCGGCATTGCAACTGTCTCGGGA
TCTCGGTGTCACTTATAACACGGCCCGGAAGCTCAAACACAAGGTGCTGCAGGTCATGCACGATCGCAACCAGGGAGAGAGGCTCAGCGGCCGCATCGAG
ATTGATGACGCCTATCTGGGCGGCGAACGGTCGGGAAAACCAGGTCGTGGTGCCGAGCATAAATTCCCCTTTGTCGCTGCGGTACAAACCAATGGCGAGG
GCCACCCGATGCGGGTTCAGCTTCGCCGTGTGAGTGGCTTTACCCTGGCCGAGGTGCGTCGCTATGGCCAACAGGCCATTGCGCCCGGAAGCCACGTTGT
CAGCGATGGTCTCAACTGTTTCCGGGCCTTTGACACGGCCACCTGCGTCCACGAGCGCCACATCACCGGAGGCGGTCGTGCCAGCGTGGCGAATCCTGAG
TTCAACTGGGTCAACACCCTGCTCGGCAACGTCAAGAACGCGATCACTGGAACTTACCACGCTATCCGGGGGCAGCATGCCCCTCGCTACCTCGCTGAGT
TCGAATACCGCTTCAATCGGCGCTACGATCTCAAAGCCATGCTTCCGCGGTTCCTGACAGTAGCAGCCCGGACACCGCCTATGCCCTATAGGCTGCTAAA
GATGGCTGACTCTTATGCGTAATCAGG
GTTCCAGCCCGGCCTGTCGTTGCCGGCTTTTCTCAAGCAATACGGCACAGAAGCACAGTGCCAGGAAGCCCTTTTCCAGCACCGCTGGCCCAAGGGATTT
GTGTGCCCTGACTGCGGCAATGCTACCGGCTGCCGGCTATCGAGGGGGCATTACCAGTGCCATCGCTGTCACCATCAGACGTCACTGACCGCCGGCACTA
TCTTTCATGCGACTCACCTGCCGTTGACCACCTGGTTCCTGGCCATTTATCTGCTGACCCAGCGTAAGAGCGGTCTCTCGGCATTGCAACTGTCTCGGGA
TCTCGGTGTCACTTATAACACGGCCCGGAAGCTCAAACACAAGGTGCTGCAGGTCATGCACGATCGCAACCAGGGAGAGAGGCTCAGCGGCCGCATCGAG
ATTGATGACGCCTATCTGGGCGGCGAACGGTCGGGAAAACCAGGTCGTGGTGCCGAGCATAAATTCCCCTTTGTCGCTGCGGTACAAACCAATGGCGAGG
GCCACCCGATGCGGGTTCAGCTTCGCCGTGTGAGTGGCTTTACCCTGGCCGAGGTGCGTCGCTATGGCCAACAGGCCATTGCGCCCGGAAGCCACGTTGT
CAGCGATGGTCTCAACTGTTTCCGGGCCTTTGACACGGCCACCTGCGTCCACGAGCGCCACATCACCGGAGGCGGTCGTGCCAGCGTGGCGAATCCTGAG
TTCAACTGGGTCAACACCCTGCTCGGCAACGTCAAGAACGCGATCACTGGAACTTACCACGCTATCCGGGGGCAGCATGCCCCTCGCTACCTCGCTGAGT
TCGAATACCGCTTCAATCGGCGCTACGATCTCAAAGCCATGCTTCCGCGGTTCCTGACAGTAGCAGCCCGGACACCGCCTATGCCCTATAGGCTGCTAAA
GATGGCTGACTCTTATGCGTAATCAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 942 bp | 313 aa | 81 | 1022 | + | No |
Chemistry : DDE
ORF sequence :
MARNPIQFQPGLSLPAFLKQYGTEAQCQEALFQHRWPKGFVCPDCGNATGCRLSRGHYQCHRCHHQTSLTAGTIFHATHLPLTTWFLAIYLLTQRKSGLS
ALQLSRDLGVTYNTARKLKHKVLQVMHDRNQGERLSGRIEIDDAYLGGERSGKPGRGAEHKFPFVAAVQTNGEGHPMRVQLRRVSGFTLAEVRRYGQQAI
APGSHVVSDGLNCFRAFDTATCVHERHITGGGRASVANPEFNWVNTLLGNVKNAITGTYHAIRGQHAPRYLAEFEYRFNRRYDLKAMLPRFLTVAARTPP
MPYRLLKMADSYA
ALQLSRDLGVTYNTARKLKHKVLQVMHDRNQGERLSGRIEIDDAYLGGERSGKPGRGAEHKFPFVAAVQTNGEGHPMRVQLRRVSGFTLAEVRRYGQQAI
APGSHVVSDGLNCFRAFDTATCVHERHITGGGRASVANPEFNWVNTLLGNVKNAITGTYHAIRGQHAPRYLAEFEYRFNRRYDLKAMLPRFLTVAARTPP
MPYRLLKMADSYA
Blast result :
Comments
ISMrsp2 is 72% aa similar to ISLsp1. ISMrsp2 was reconstructed in silico by deletion of the ISMrsp1 sequence and one of the direct repeats generated by its insertion.
References
1] Ward,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct submission GenBank.