ISLsp2
- Family IS1595
- Group ISPna2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
DS180871 | ND | Leptospirillum sp. | Leptospirillum sp. Group II UBA |
DNA section
IS Length : 1051 bp
Ends
IR Length : 25/26
IRL : GGCTATGTTCCCGAGGCTTGTTGCATAGTATCGGAATGAGGGTAGGTTTT
IRR : GGCTATGTTCCCGAGCCTTGTTGCATCCCATCCCGACCCAGCGCCAGAGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATCTATTA | TTTTTATT | TTCTGTTCGCCGTT | 8 |
DNA sequence
GGCTATGTTCCCGAGGCTTGTTGCATAGTATCGGAATGAGGGTAGGTTTTACATAGGAGGTGACTCCCATGAGAAAACCTGCTTTCCAACGGTGTTTGAG
GTCGATGAAGCACCTGACATCGGCTCAGAGGCACGAACTGAAGATCGTTATTGAACAAGTGGACAACAAAAACCTGGTGGAAGAGGTCGCATCCCTGGTG
GGGATCCCCACCTGTTGCCCTCATTGCCGCCTTCCCTGTATTCGACCGTGGGGCAACGCATCCGGACTCCCACGCTATCGGTGCCAGAGTTGCAAACGAA
CCTTTGGTCCGCTGACGAACACTCCCCTGGCGGGACTCCACCACAAGGACCGCTGGCTCTTGTATCTGGAAGGATTCGCCTGGGGAGAGTCGGTCCGGAA
GGCGGCCCGGCGCTGCGGCATCAACAAGAAGGCCTCCTTCAACTGGCGGCATCGTTTCCTGGCTCTTCCCTCCGGCCTCAAAGCCCGGCAGGAGAACGGG
ATTGTCGAAGCTGACGAGAGCTGGTTCCTGCGCTCTTACAAGGGGCAACGACACGACCTTCCGAGAAAACCGCGGAAACGGGGCGGTCACGCCTCGAAAC
GGGGGTTGTCCAGCGAACAGGTTCCGGTCCTGGTGGTCCGGGACCGTTCGGGAGCCACTTCCGATGCGATCCTGCCCAAGGACGACCATGTGGCGATCGA
AGCCGTGCTGACACCCCTTCTGGCCCGCGATGCGGTCCTCTGCACCGATGGAGGCGGAAGGGGACCCTTCGCCCTGGCGGCCCGCGAGATGGGGATGGCC
CACCGGGCGGTCAACCTGAGAAAGGGAATCCGGGTGCTGGCCGGTGTCTACCACATCCAGAATGTGAACGGGTACCACTCGAGGCTGAAAGGATGGATGC
AGCGATTTCATGGAGTGGCCACCAGCTACCTGGGACATTACCTCGGCTGGAGACGAATGCTGGAACGGTTTGGAGATCATCTCAACTCCGCTCTGTGGCT
AACTCTGGCGCTGGGTCGGGATGGGATGCAACAAGGCTCGGGAACATAGCC
GTCGATGAAGCACCTGACATCGGCTCAGAGGCACGAACTGAAGATCGTTATTGAACAAGTGGACAACAAAAACCTGGTGGAAGAGGTCGCATCCCTGGTG
GGGATCCCCACCTGTTGCCCTCATTGCCGCCTTCCCTGTATTCGACCGTGGGGCAACGCATCCGGACTCCCACGCTATCGGTGCCAGAGTTGCAAACGAA
CCTTTGGTCCGCTGACGAACACTCCCCTGGCGGGACTCCACCACAAGGACCGCTGGCTCTTGTATCTGGAAGGATTCGCCTGGGGAGAGTCGGTCCGGAA
GGCGGCCCGGCGCTGCGGCATCAACAAGAAGGCCTCCTTCAACTGGCGGCATCGTTTCCTGGCTCTTCCCTCCGGCCTCAAAGCCCGGCAGGAGAACGGG
ATTGTCGAAGCTGACGAGAGCTGGTTCCTGCGCTCTTACAAGGGGCAACGACACGACCTTCCGAGAAAACCGCGGAAACGGGGCGGTCACGCCTCGAAAC
GGGGGTTGTCCAGCGAACAGGTTCCGGTCCTGGTGGTCCGGGACCGTTCGGGAGCCACTTCCGATGCGATCCTGCCCAAGGACGACCATGTGGCGATCGA
AGCCGTGCTGACACCCCTTCTGGCCCGCGATGCGGTCCTCTGCACCGATGGAGGCGGAAGGGGACCCTTCGCCCTGGCGGCCCGCGAGATGGGGATGGCC
CACCGGGCGGTCAACCTGAGAAAGGGAATCCGGGTGCTGGCCGGTGTCTACCACATCCAGAATGTGAACGGGTACCACTCGAGGCTGAAAGGATGGATGC
AGCGATTTCATGGAGTGGCCACCAGCTACCTGGGACATTACCTCGGCTGGAGACGAATGCTGGAACGGTTTGGAGATCATCTCAACTCCGCTCTGTGGCT
AACTCTGGCGCTGGGTCGGGATGGGATGCAACAAGGCTCGGGAACATAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
981 bp | 326 aa | 69 | 1049 | + | No |
Chemistry : DDE
ORF sequence :
MRKPAFQRCLRSMKHLTSAQRHELKIVIEQVDNKNLVEEVASLVGIPTCCPHCRLPCIRPWGNASGLPRYRCQSCKRTFGPLTNTPLAGLHHKDRWLLYL
EGFAWGESVRKAARRCGINKKASFNWRHRFLALPSGLKARQENGIVEADESWFLRSYKGQRHDLPRKPRKRGGHASKRGLSSEQVPVLVVRDRSGATSDA
ILPKDDHVAIEAVLTPLLARDAVLCTDGGGRGPFALAAREMGMAHRAVNLRKGIRVLAGVYHIQNVNGYHSRLKGWMQRFHGVATSYLGHYLGWRRMLER
FGDHLNSALWLTLALGRDGMQQGSGT
EGFAWGESVRKAARRCGINKKASFNWRHRFLALPSGLKARQENGIVEADESWFLRSYKGQRHDLPRKPRKRGGHASKRGLSSEQVPVLVVRDRSGATSDA
ILPKDDHVAIEAVLTPLLARDAVLCTDGGGRGPFALAAREMGMAHRAVNLRKGIRVLAGVYHIQNVNGYHSRLKGWMQRFHGVATSYLGHYLGWRRMLER
FGDHLNSALWLTLALGRDGMQQGSGT
Blast result :
Comments
ISLsp2 is 64% aa similar to ISAzvi1.
References
1] Lo,I., Denef,V.J., Verberkmoes,N.C., Shah,M.B., Goltsman,D., Dibartolo,G., Tyson,G.W., Allen,E.E., Ram,R.J., Detter,J.C., Richardson,P., Thelen,M.P., Hettich,R.L. and Banfield,J.F. (2007) Nature 446 (7135), 537-541