ISLsp2

  • Family IS1595
  • Group ISPna2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
DS180871 ND Leptospirillum sp.
Leptospirillum sp. Group II UBA
DNA section
IS Length : 1051 bp

Ends


IR Length : 25/26

IRL : GGCTATGTTCCCGAGGCTTGTTGCATAGTATCGGAATGAGGGTAGGTTTT
IRR : GGCTATGTTCCCGAGCCTTGTTGCATCCCATCCCGACCCAGCGCCAGAGT

Insertion site


Left flankDirect repeatRight flankDR Length
GATCTATTATTTTTATTTTCTGTTCGCCGTT8

DNA sequence

GGCTATGTTCCCGAGGCTTGTTGCATAGTATCGGAATGAGGGTAGGTTTTACATAGGAGGTGACTCCCATGAGAAAACCTGCTTTCCAACGGTGTTTGAG
GTCGATGAAGCACCTGACATCGGCTCAGAGGCACGAACTGAAGATCGTTATTGAACAAGTGGACAACAAAAACCTGGTGGAAGAGGTCGCATCCCTGGTG
GGGATCCCCACCTGTTGCCCTCATTGCCGCCTTCCCTGTATTCGACCGTGGGGCAACGCATCCGGACTCCCACGCTATCGGTGCCAGAGTTGCAAACGAA
CCTTTGGTCCGCTGACGAACACTCCCCTGGCGGGACTCCACCACAAGGACCGCTGGCTCTTGTATCTGGAAGGATTCGCCTGGGGAGAGTCGGTCCGGAA
GGCGGCCCGGCGCTGCGGCATCAACAAGAAGGCCTCCTTCAACTGGCGGCATCGTTTCCTGGCTCTTCCCTCCGGCCTCAAAGCCCGGCAGGAGAACGGG
ATTGTCGAAGCTGACGAGAGCTGGTTCCTGCGCTCTTACAAGGGGCAACGACACGACCTTCCGAGAAAACCGCGGAAACGGGGCGGTCACGCCTCGAAAC
GGGGGTTGTCCAGCGAACAGGTTCCGGTCCTGGTGGTCCGGGACCGTTCGGGAGCCACTTCCGATGCGATCCTGCCCAAGGACGACCATGTGGCGATCGA
AGCCGTGCTGACACCCCTTCTGGCCCGCGATGCGGTCCTCTGCACCGATGGAGGCGGAAGGGGACCCTTCGCCCTGGCGGCCCGCGAGATGGGGATGGCC
CACCGGGCGGTCAACCTGAGAAAGGGAATCCGGGTGCTGGCCGGTGTCTACCACATCCAGAATGTGAACGGGTACCACTCGAGGCTGAAAGGATGGATGC
AGCGATTTCATGGAGTGGCCACCAGCTACCTGGGACATTACCTCGGCTGGAGACGAATGCTGGAACGGTTTGGAGATCATCTCAACTCCGCTCTGTGGCT
AACTCTGGCGCTGGGTCGGGATGGGATGCAACAAGGCTCGGGAACATAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
981 bp326 aa691049+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRKPAFQRCLRSMKHLTSAQRHELKIVIEQVDNKNLVEEVASLVGIPTCCPHCRLPCIRPWGNASGLPRYRCQSCKRTFGPLTNTPLAGLHHKDRWLLYL
EGFAWGESVRKAARRCGINKKASFNWRHRFLALPSGLKARQENGIVEADESWFLRSYKGQRHDLPRKPRKRGGHASKRGLSSEQVPVLVVRDRSGATSDA
ILPKDDHVAIEAVLTPLLARDAVLCTDGGGRGPFALAAREMGMAHRAVNLRKGIRVLAGVYHIQNVNGYHSRLKGWMQRFHGVATSYLGHYLGWRRMLER
FGDHLNSALWLTLALGRDGMQQGSGT

 

Blast result :
Comments
ISLsp2 is 64% aa similar to ISAzvi1.
References
1] Lo,I., Denef,V.J., Verberkmoes,N.C., Shah,M.B., Goltsman,D., Dibartolo,G., Tyson,G.W., Allen,E.E., Ram,R.J., Detter,J.C., Richardson,P., Thelen,M.P., Hettich,R.L. and Banfield,J.F. (2007) Nature 446 (7135), 537-541