ISAav5
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008752 | ND | Acidovorax avenae | Acidovorax avenae subsp. citrulli AAC00-1 |
DNA section
IS Length : 1028 bp
Ends
IR Length : 19/24
IRL : TGTCTCAATAGGTTGTTCATCCAGGCCCGACCTGGGAAGCTGTGGTTACC
IRR : TGTTGAGTCTCACGAGGTTGTTCACACCCGGAATGCGTGTGATGGGAGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCTGGGCCGC | GCTAGT | GCAAAAGCCG | 6 |
DNA sequence
TGTCTCAATAGGTTGTTCATCCAGGCCCGACCTGGGAAGCTGTGGTTACCAGGCCCCAGCAACTCAGGACAGGACACCGGATGAACAGTCATAAGCATGC
GCGATTGACCCGCGCAGGTCGAGCCCTTCTGGTCGACAGAGTGCTCCAGCAGAACTGGACGATGCGCCAAGCCAGCGAAGCCGCAGGCGTGAGCCTGCGC
ACCGGCTACAAGTGGATGGCCCGCTTTCGCAACGAAGGCCCCGATGGCTTGCTCGACCGCAGCTCCCGCCCGCACCGCAGCCCCCAGGCCTGCCCACCCG
AGCAGGTCCAGCTGTTCGAACAGCAGCGCCGCCAGCGCTTGCCCCTTTGGCGCATCGCCCGTGAGACCGGCCGCAGTCTGGCGACCGTAGCGCGCCACAT
GGACCGCATCGGCCTGAGCCGGCTCGCATCGCTGGAGCCACCGCAGCCCGTGCGTCGCTACGAGCGCGCCAGCCCGGGCGAACTGCTGCACATCGACACC
AAGCGGCTCGGCCGCATCCACGGCGTGGGCCACCGCATCACCGGCGACCGAACCCAGAACCGCAACCGTGGCATCGGTTGGGATGCGGTGCATCTGGCCA
TCGACGACCACTCCCGCGTGTCCTTCGCCCAGGTCCTGGCCGACGAGACAGCGCTGAGTTGCGTGCAGTTCCTGCGAGACGCGGTGGCCTACTACGCCAA
CATCGGCGTACGCATCGAGCGCGTCATGACCGACAACGGCTCTGGCTACAAAAACGCCTTCCGCGCGGCCTGCGAGGAATTGGGCATCCGCCACATCCGC
ACGCGGCCCTATACGCCCAAGACCAACGGCAAGGCCGAGCGATTCGTACAGACCAGCCTGCGGGAGTGGGCCTATGCCAGACCCTACGAAAGCTCAGCCC
AACGCACGGCTGCCCTGCAGCCCTTCATTGACGGCTACAACTGGTGCCGGCCACACTCCGCGCTCGGCCATCAGCCTCCCATCACACGCATTCCGGGTGT
GAACAACCTCGTGAGACTCAACA
GCGATTGACCCGCGCAGGTCGAGCCCTTCTGGTCGACAGAGTGCTCCAGCAGAACTGGACGATGCGCCAAGCCAGCGAAGCCGCAGGCGTGAGCCTGCGC
ACCGGCTACAAGTGGATGGCCCGCTTTCGCAACGAAGGCCCCGATGGCTTGCTCGACCGCAGCTCCCGCCCGCACCGCAGCCCCCAGGCCTGCCCACCCG
AGCAGGTCCAGCTGTTCGAACAGCAGCGCCGCCAGCGCTTGCCCCTTTGGCGCATCGCCCGTGAGACCGGCCGCAGTCTGGCGACCGTAGCGCGCCACAT
GGACCGCATCGGCCTGAGCCGGCTCGCATCGCTGGAGCCACCGCAGCCCGTGCGTCGCTACGAGCGCGCCAGCCCGGGCGAACTGCTGCACATCGACACC
AAGCGGCTCGGCCGCATCCACGGCGTGGGCCACCGCATCACCGGCGACCGAACCCAGAACCGCAACCGTGGCATCGGTTGGGATGCGGTGCATCTGGCCA
TCGACGACCACTCCCGCGTGTCCTTCGCCCAGGTCCTGGCCGACGAGACAGCGCTGAGTTGCGTGCAGTTCCTGCGAGACGCGGTGGCCTACTACGCCAA
CATCGGCGTACGCATCGAGCGCGTCATGACCGACAACGGCTCTGGCTACAAAAACGCCTTCCGCGCGGCCTGCGAGGAATTGGGCATCCGCCACATCCGC
ACGCGGCCCTATACGCCCAAGACCAACGGCAAGGCCGAGCGATTCGTACAGACCAGCCTGCGGGAGTGGGCCTATGCCAGACCCTACGAAAGCTCAGCCC
AACGCACGGCTGCCCTGCAGCCCTTCATTGACGGCTACAACTGGTGCCGGCCACACTCCGCGCTCGGCCATCAGCCTCCCATCACACGCATTCCGGGTGT
GAACAACCTCGTGAGACTCAACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 943 bp | 315 aa | 81 | 1023 | + | No |
Chemistry : DDE
ORF sequence :
MNSHKHARLTRAGRALLVDRVLQQNWTMRQASEAAGVSLRTGYKWMARFRNEGPDGLLDRSSRPHRSPQACPPEQVQLFEQQRRQRLPLWRIARETGRSL
ATVARHMDRIGLSRLASLEPPQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQNRNRGIGWDAVHLAIDDHSRVSFAQVLADETALSCVQFLRD
AVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIRTRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPP
ITRIPGVNNLVRLNS
ATVARHMDRIGLSRLASLEPPQPVRRYERASPGELLHIDTKRLGRIHGVGHRITGDRTQNRNRGIGWDAVHLAIDDHSRVSFAQVLADETALSCVQFLRD
AVAYYANIGVRIERVMTDNGSGYKNAFRAACEELGIRHIRTRPYTPKTNGKAERFVQTSLREWAYARPYESSAQRTAALQPFIDGYNWCRPHSALGHQPP
ITRIPGVNNLVRLNS
Blast result :
Comments
ISAav5 is 88% aa similar to IS1002. The stop codon is in the DR.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Kiss,H., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.(2007) Direct Submission GenBank.