ISEc19
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_000913 | ND | Escherichia coli | Escherichia coli K12 |
DNA section
IS Length : 1229 bp
Ends
IR Length : 24/30
IRL : TGTTCGGGGACATGGTAGACACTTACAACTAAGGCATAAGAACCCGTTTA
IRR : TGGTCGGGGACATGGTGAACACTTTTTAACATCCTTTACCCATGGTGATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTGAACACT | CCTGATTGTC | 0 |
DNA sequence
TGTTCGGGGACATGGTAGACACTTACAACTAAGGCATAAGAACCCGTTTATGGAGTCGCTTATGCCCTGGGATGCGAGAGATACCATGTCATTACGTACT
GAGTTTGTTTTGTTCGCCTCGCAGGACGGGGCGAACATCCGTTCCCTCTGCCGTCGCTTCGGCATTTCACCTGCCACCGGCTACAAGTGGCTCCAGCGCT
GGGCTCAGGAAGGTGCCGCCGGTCTTCAGGACCGCCCGCGCATTCCGCACCATTCCCCGAACCGCTCATCTGACGACATCACGGCCCTGCTGCGTATGGC
CCATGACCGTCATGAACGCTGGGGAGCCCGCAAGATTAAGCGCTGGCTCGAGGACCAGGGGCACACCATGCCCGCCTTCAGCACCGTCCATAACCTGATG
GCCCGCCATGGCCTGCTGCCGGGCGCTTCACCGGGCATTCCCGCCACGGGCCGGTTCGAACACGACGCGCCGAACCGCCTCTGGCAGATGGATTTTAAGG
GCCACTTTCCTTTTGGCGGTGGACGCTGCCATCCGCTCACCCTGCTGGACGACCACTCCCGTTTTTCCCTGTGCCTGGCGCACTGTACCGATGAACGGCG
CGAGACCGTGCAGCAGCAGCTGGTCAGCGTGTTTGAGCGTTACGGCCTGCCGGACCGGATGACCATGGATAACGGCTCACCGTGGGGCGACACCACCGGC
ACCTGGACGGCGCTGGAGCTGTGGCTGATGCGCCTGGGTATCCGGGTGGGGCACTCCCGGCCTTATCATCCGCAGACGCAGGGGAAGCTGGAGCGTTTTC
ACCGCAGCCTGAAGGCGGAAGTGCTGCAGGGAAAATGGTTCGCAGACAGCGGTGAACTGCAGCGCGCCTTCGACCACTGGCGGACGGTCTATAACCTTGA
ACGCCCGCACGAGGCGCTGGATATGGCGGTACCGGGCTCGCGGTATCAGCCGTCAGCGCGGCAGTACAGCGGCAACACAACGCCCCCGGAATACGATGAA
GGGGTGATGGTCAGGAAAGTGGATATCAGCGGAAAGCTGAGCGTGAAAGGGGTAAGTCTGAGCGCAGGCAAGGCGTTCAGGGGAGAACGGGTCGGGCTGA
AGGAGATGCAGGAAGACGGCAGCTACGAGGTGTGGTGGTACAGCACGAAAGTGGGGGTGATCGACCTGAAGAAAAAGTCGATCACCATGGGTAAAGGATG
TTAAAAAGTGTTCACCATGTCCCCGACCA
GAGTTTGTTTTGTTCGCCTCGCAGGACGGGGCGAACATCCGTTCCCTCTGCCGTCGCTTCGGCATTTCACCTGCCACCGGCTACAAGTGGCTCCAGCGCT
GGGCTCAGGAAGGTGCCGCCGGTCTTCAGGACCGCCCGCGCATTCCGCACCATTCCCCGAACCGCTCATCTGACGACATCACGGCCCTGCTGCGTATGGC
CCATGACCGTCATGAACGCTGGGGAGCCCGCAAGATTAAGCGCTGGCTCGAGGACCAGGGGCACACCATGCCCGCCTTCAGCACCGTCCATAACCTGATG
GCCCGCCATGGCCTGCTGCCGGGCGCTTCACCGGGCATTCCCGCCACGGGCCGGTTCGAACACGACGCGCCGAACCGCCTCTGGCAGATGGATTTTAAGG
GCCACTTTCCTTTTGGCGGTGGACGCTGCCATCCGCTCACCCTGCTGGACGACCACTCCCGTTTTTCCCTGTGCCTGGCGCACTGTACCGATGAACGGCG
CGAGACCGTGCAGCAGCAGCTGGTCAGCGTGTTTGAGCGTTACGGCCTGCCGGACCGGATGACCATGGATAACGGCTCACCGTGGGGCGACACCACCGGC
ACCTGGACGGCGCTGGAGCTGTGGCTGATGCGCCTGGGTATCCGGGTGGGGCACTCCCGGCCTTATCATCCGCAGACGCAGGGGAAGCTGGAGCGTTTTC
ACCGCAGCCTGAAGGCGGAAGTGCTGCAGGGAAAATGGTTCGCAGACAGCGGTGAACTGCAGCGCGCCTTCGACCACTGGCGGACGGTCTATAACCTTGA
ACGCCCGCACGAGGCGCTGGATATGGCGGTACCGGGCTCGCGGTATCAGCCGTCAGCGCGGCAGTACAGCGGCAACACAACGCCCCCGGAATACGATGAA
GGGGTGATGGTCAGGAAAGTGGATATCAGCGGAAAGCTGAGCGTGAAAGGGGTAAGTCTGAGCGCAGGCAAGGCGTTCAGGGGAGAACGGGTCGGGCTGA
AGGAGATGCAGGAAGACGGCAGCTACGAGGTGTGGTGGTACAGCACGAAAGTGGGGGTGATCGACCTGAAGAAAAAGTCGATCACCATGGGTAAAGGATG
TTAAAAAGTGTTCACCATGTCCCCGACCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1155 bp | 384 aa | 50 | 1204 | + | No |
Chemistry : DDE
ORF sequence :
MESLMPWDARDTMSLRTEFVLFASQDGANIRSLCRRFGISPATGYKWLQRWAQEGAAGLQDRPRIPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWL
EDQGHTMPAFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGGRCHPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGL
PDRMTMDNGSPWGDTTGTWTALELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPGSRYQ
PSARQYSGNTTPPEYDEGVMVRKVDISGKLSVKGVSLSAGKAFRGERVGLKEMQEDGSYEVWWYSTKVGVIDLKKKSITMGKGC
EDQGHTMPAFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGGRCHPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGL
PDRMTMDNGSPWGDTTGTWTALELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPGSRYQ
PSARQYSGNTTPPEYDEGVMVRKVDISGKLSVKGVSLSAGKAFRGERVGLKEMQEDGSYEVWWYSTKVGVIDLKKKSITMGKGC
Blast result :
Comments
ISEc19 is 45% aa similar to ISMav2.
References
1] Riley,M., Abe,T., Arnaud,M.B., Berlyn,M.K., Blattner,F.R., Chaudhuri,R.R., Glasner,J.D., Horiuchi,T., Keseler,I.M., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. III, Rudd,K.E., Serres,M.H., Thomas,G.H., Thomson,N.R., Wishart,D. and Wanner,B.L. (2006).(er) Nucleic Acids Res. 34 (1), 1-9