ISEc19

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_000913 ND Escherichia coli
Escherichia coli K12
DNA section
IS Length : 1229 bp

Ends


IR Length : 24/30

IRL : TGTTCGGGGACATGGTAGACACTTACAACTAAGGCATAAGAACCCGTTTA
IRR : TGGTCGGGGACATGGTGAACACTTTTTAACATCCTTTACCCATGGTGATC

Insertion site


Left flankDirect repeatRight flankDR Length
AGTGAACACTCCTGATTGTC0

DNA sequence

TGTTCGGGGACATGGTAGACACTTACAACTAAGGCATAAGAACCCGTTTATGGAGTCGCTTATGCCCTGGGATGCGAGAGATACCATGTCATTACGTACT
GAGTTTGTTTTGTTCGCCTCGCAGGACGGGGCGAACATCCGTTCCCTCTGCCGTCGCTTCGGCATTTCACCTGCCACCGGCTACAAGTGGCTCCAGCGCT
GGGCTCAGGAAGGTGCCGCCGGTCTTCAGGACCGCCCGCGCATTCCGCACCATTCCCCGAACCGCTCATCTGACGACATCACGGCCCTGCTGCGTATGGC
CCATGACCGTCATGAACGCTGGGGAGCCCGCAAGATTAAGCGCTGGCTCGAGGACCAGGGGCACACCATGCCCGCCTTCAGCACCGTCCATAACCTGATG
GCCCGCCATGGCCTGCTGCCGGGCGCTTCACCGGGCATTCCCGCCACGGGCCGGTTCGAACACGACGCGCCGAACCGCCTCTGGCAGATGGATTTTAAGG
GCCACTTTCCTTTTGGCGGTGGACGCTGCCATCCGCTCACCCTGCTGGACGACCACTCCCGTTTTTCCCTGTGCCTGGCGCACTGTACCGATGAACGGCG
CGAGACCGTGCAGCAGCAGCTGGTCAGCGTGTTTGAGCGTTACGGCCTGCCGGACCGGATGACCATGGATAACGGCTCACCGTGGGGCGACACCACCGGC
ACCTGGACGGCGCTGGAGCTGTGGCTGATGCGCCTGGGTATCCGGGTGGGGCACTCCCGGCCTTATCATCCGCAGACGCAGGGGAAGCTGGAGCGTTTTC
ACCGCAGCCTGAAGGCGGAAGTGCTGCAGGGAAAATGGTTCGCAGACAGCGGTGAACTGCAGCGCGCCTTCGACCACTGGCGGACGGTCTATAACCTTGA
ACGCCCGCACGAGGCGCTGGATATGGCGGTACCGGGCTCGCGGTATCAGCCGTCAGCGCGGCAGTACAGCGGCAACACAACGCCCCCGGAATACGATGAA
GGGGTGATGGTCAGGAAAGTGGATATCAGCGGAAAGCTGAGCGTGAAAGGGGTAAGTCTGAGCGCAGGCAAGGCGTTCAGGGGAGAACGGGTCGGGCTGA
AGGAGATGCAGGAAGACGGCAGCTACGAGGTGTGGTGGTACAGCACGAAAGTGGGGGTGATCGACCTGAAGAAAAAGTCGATCACCATGGGTAAAGGATG
TTAAAAAGTGTTCACCATGTCCCCGACCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1155 bp384 aa501204+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MESLMPWDARDTMSLRTEFVLFASQDGANIRSLCRRFGISPATGYKWLQRWAQEGAAGLQDRPRIPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWL
EDQGHTMPAFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGGRCHPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGL
PDRMTMDNGSPWGDTTGTWTALELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPGSRYQ
PSARQYSGNTTPPEYDEGVMVRKVDISGKLSVKGVSLSAGKAFRGERVGLKEMQEDGSYEVWWYSTKVGVIDLKKKSITMGKGC

 

Blast result :
Comments
ISEc19 is 45% aa similar to ISMav2.
References
1] Riley,M., Abe,T., Arnaud,M.B., Berlyn,M.K., Blattner,F.R., Chaudhuri,R.R., Glasner,J.D., Horiuchi,T., Keseler,I.M., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. III, Rudd,K.E., Serres,M.H., Thomas,G.H., Thomson,N.R., Wishart,D. and Wanner,B.L. (2006).(er) Nucleic Acids Res. 34 (1), 1-9