ISAisp3
- Family IS481
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008782 | ND | Acidovorax sp. | Acidovorax sp. |
DNA section
IS Length : 1082 bp
Ends
IR Length : 16/18
IRL : TGTCTCAATAGGTTGTTCATCCAGGCCCGACCTGGGAAGCTGTGGTTACC
IRR : TGTTGAGTCTCACGAGGTTGTTCACACCCGGAATGCGTGTGATGGGAGGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GTTTGCGGTC | CGTAGG | CTTGGCCCGG | 6 |
DNA sequence
TGTCTCAATAGGTTGTTCATCCAGGCCCGACCTGGGAAGCTGTGGTTACCAGGCCCCAGCAACTCAGGACAGGACACCGGATGAACAGTCATAAGCATGC
GCGATTGACCCGCGCAGGTCGAGCCCTTCTGGTCGACAGAGTGCTCCAGCAGAACTGGACGATGCGCCAAGCCAGCGAAGCCGCAGGCGTGAGCCTGCGC
ACCGGCTACAAGTGGATGGCCCGCTTTCGCAACGAAGGCCCCGATGGCTTGCTCGACCGCAGCTCCCGCCCGCACCGCAGCCCCCAGGCCTGCCCACCCG
AGCAGGTCCAGCTGTTCGAACAGCAGCGCCGCCAGCGCTTGCCCCTTTGGCGCATCGCCCGTGAGACCGGCCGCAGTCTGGCGACCGTAGCGCGCCACAT
GGACCGCATCGGCCTGAGCCGGCTCGCATCGCTGGAGCCACCGCAGCCCGTGCGTCGCTACGAGCGCGCCAGCCCGGGCGAACTGCTGCACATCGACACC
AAGCGGCTCGGCCGCATCCACGGCGTGGGCCACCGCATCACCGGCGACCGAACCCAGAACCGCAACCGTGGCATCGGTTGGGATGCGGTGCATCTGGCCA
TCGACGACCACTCCCGCGTGTCCTTCGCCCAGGTCCTGGCCGACGAGACAGCGCTGAGTTGCGTGCAGTTCCTGCGAGACGCGGTGGCCTACTACGCCAA
CATCGGCGTACGCATCGAGCGCGTCATGACCGACAACGGCTCTGGCTACAAAAACGCCTTCCGCGCGGCCTGCGAGGAATTGGGCATCCGCCACATCCGC
ACGCGGCCCTATACGCCCAAGACCAACGGCAAGGCCGAGCGATTCGTACAGACCAGCCTGCGGGAGTGGGCCTATGCCAGACCCTACGAAAGCTCAGCCC
AACGCACGGCTGCCCTGCAGCCCTTCATTGACGGCTACAACTGGTGCCGGCCACACTCCGCGCTCGGCCATCAGCCTCCCATCACACGCATTCCGGGTGT
GAACAACCTCGTGAGACTCAACA
GCGATTGACCCGCGCAGGTCGAGCCCTTCTGGTCGACAGAGTGCTCCAGCAGAACTGGACGATGCGCCAAGCCAGCGAAGCCGCAGGCGTGAGCCTGCGC
ACCGGCTACAAGTGGATGGCCCGCTTTCGCAACGAAGGCCCCGATGGCTTGCTCGACCGCAGCTCCCGCCCGCACCGCAGCCCCCAGGCCTGCCCACCCG
AGCAGGTCCAGCTGTTCGAACAGCAGCGCCGCCAGCGCTTGCCCCTTTGGCGCATCGCCCGTGAGACCGGCCGCAGTCTGGCGACCGTAGCGCGCCACAT
GGACCGCATCGGCCTGAGCCGGCTCGCATCGCTGGAGCCACCGCAGCCCGTGCGTCGCTACGAGCGCGCCAGCCCGGGCGAACTGCTGCACATCGACACC
AAGCGGCTCGGCCGCATCCACGGCGTGGGCCACCGCATCACCGGCGACCGAACCCAGAACCGCAACCGTGGCATCGGTTGGGATGCGGTGCATCTGGCCA
TCGACGACCACTCCCGCGTGTCCTTCGCCCAGGTCCTGGCCGACGAGACAGCGCTGAGTTGCGTGCAGTTCCTGCGAGACGCGGTGGCCTACTACGCCAA
CATCGGCGTACGCATCGAGCGCGTCATGACCGACAACGGCTCTGGCTACAAAAACGCCTTCCGCGCGGCCTGCGAGGAATTGGGCATCCGCCACATCCGC
ACGCGGCCCTATACGCCCAAGACCAACGGCAAGGCCGAGCGATTCGTACAGACCAGCCTGCGGGAGTGGGCCTATGCCAGACCCTACGAAAGCTCAGCCC
AACGCACGGCTGCCCTGCAGCCCTTCATTGACGGCTACAACTGGTGCCGGCCACACTCCGCGCTCGGCCATCAGCCTCCCATCACACGCATTCCGGGTGT
GAACAACCTCGTGAGACTCAACA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 972 bp | 323 aa | 111 | 1082 | + | No |
Chemistry : DDE
ORF sequence :
MLIALHKNARTTPAVRAEIAASSETAPVLAQRYGITEQTVYKWKKREVFGDRSHTAHHLQTVLTPAQETVVVHLRRTLLLPLDDLLAVTREFICPHVSRS
GLDRCLRRHGAGNLNALKPQEPQPVHKAFKTYEPGYVHMDVKYLPQMQDESSRRYLFVAIDRATRWVFVQFKANKTAASAQAFLKALHKACPIRINKLLT
DNGKEFTDRLFASKEREPSGNHEFDQLCRELGIEHRLTKPRTPRTNGMVERFNGRIADVLKTHRFNSREDMEQTLQRYVALYNHQLPQSALGSKTPMQAM
KQWYLERPDLFHKRPYDRPGCNT
GLDRCLRRHGAGNLNALKPQEPQPVHKAFKTYEPGYVHMDVKYLPQMQDESSRRYLFVAIDRATRWVFVQFKANKTAASAQAFLKALHKACPIRINKLLT
DNGKEFTDRLFASKEREPSGNHEFDQLCRELGIEHRLTKPRTPRTNGMVERFNGRIADVLKTHRFNSREDMEQTLQRYVALYNHQLPQSALGSKTPMQAM
KQWYLERPDLFHKRPYDRPGCNT
Blast result :
Comments
ISAisp3 is 42% aa similar to IS481v2.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.(2007) Direct submission GenBank.