ISVei2
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008786 | ND | Verminephrobacter eiseniae | Verminephrobacter eiseniae EF01-2 |
DNA section
IS Length : 1082 bp
Ends
IR Length : 23/34
IRL : TGTACATAATCCCGGACGATTGCATAAACTCCAAACGCTATCCGCTGTTC
IRR : TGTCGCATCCCGGACGATCATATGGCCTCTTGTGAAACAGATGCGGGTGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTGGAACCTA | GGTAAGCGAG | 0 |
DNA sequence
TGTACATAATCCCGGACGATTGCATAAACTCCAAACGCTATCCGCTGTTCATGGCCAGAGCAGTCCTGCAGGAGCTGATAGAGTCCTTGCAATCCACCCC
GGGGAGTGTCAAACCATGTCGATGGCCCTGCACAAGAACGCCCGCACCACGCCGGCCGTGCGTGCCGAGATAGCCGCCAGTAGCCAGACCGCCAGTGTCT
TGGCCCAGCGCTATGGCATCACCGAACAGACGGTCTACAAGTGGAAGAAACGCGAGGTCTTCGTGGACCGCTGTCACACAGCCCATCGCCTGCAGACCGT
GCTCACGCCTGCACAAGAGACCGTGGTGGTCCACCTGCGGCGCACCTTGCTGCTGCCCCTGGATGACCTGCTGGCCGTTACGCGGGAGTTCCTCTGCCCT
GATGTGTCACGCTCGGGGCTGGACCGGTGCCTGCGCCGCCACGGGGTGGGCAACCTCGATGCCCTCAAGCCCCGGGAGCCTACGGTGACCCACCAGGCAT
TCAAGAGCTACGAGCCGGGCTACGTGCACATGGATGTGAAATACCTGCCCCAGATGCGCGACGAGAGCCGCCGGCGCTACCTGTTCGTCGCCATCGACCG
GGCCACGCGATGGGTGTTCGTGCAGCTCAAGGCCAACAAGACGGCCGCCAGTGCACAGGCCTTCCTGAAGACATTGCACAAGGCTTGCCCGATCAGGATC
AACAAGTTGCTGACCGACAACGGCAAGGAGTTCACCGACCGACTGTTTGCCAGCGGCGAGCGCCAGGCCAGTGGCAACCATGAGTTCGACCAGTTGTGCC
AGGCGCTGGACATAGAGCATCGGCTGACCAAGCCCAGGACGCCGAGAACCAACGGCATGGTCGAGAGGTTCAATGGTCGCATAGCCGATGTCCTGAAGAC
CCACAGGTTCGACAGCCGCGAGGACATGGAGCAGACCTTGCTGCGCTATGTGGCCTTGTACAATCACCAACTGCCGCAATCAGCGCTGGGCAGCAAGACG
CCTATGCAGGCCATGAAAGAGTGGCATCAGCAGCACCCGCATCTGTTTCACAAGAGGCCATATGATCGTCCGGGATGCGACA
GGGGAGTGTCAAACCATGTCGATGGCCCTGCACAAGAACGCCCGCACCACGCCGGCCGTGCGTGCCGAGATAGCCGCCAGTAGCCAGACCGCCAGTGTCT
TGGCCCAGCGCTATGGCATCACCGAACAGACGGTCTACAAGTGGAAGAAACGCGAGGTCTTCGTGGACCGCTGTCACACAGCCCATCGCCTGCAGACCGT
GCTCACGCCTGCACAAGAGACCGTGGTGGTCCACCTGCGGCGCACCTTGCTGCTGCCCCTGGATGACCTGCTGGCCGTTACGCGGGAGTTCCTCTGCCCT
GATGTGTCACGCTCGGGGCTGGACCGGTGCCTGCGCCGCCACGGGGTGGGCAACCTCGATGCCCTCAAGCCCCGGGAGCCTACGGTGACCCACCAGGCAT
TCAAGAGCTACGAGCCGGGCTACGTGCACATGGATGTGAAATACCTGCCCCAGATGCGCGACGAGAGCCGCCGGCGCTACCTGTTCGTCGCCATCGACCG
GGCCACGCGATGGGTGTTCGTGCAGCTCAAGGCCAACAAGACGGCCGCCAGTGCACAGGCCTTCCTGAAGACATTGCACAAGGCTTGCCCGATCAGGATC
AACAAGTTGCTGACCGACAACGGCAAGGAGTTCACCGACCGACTGTTTGCCAGCGGCGAGCGCCAGGCCAGTGGCAACCATGAGTTCGACCAGTTGTGCC
AGGCGCTGGACATAGAGCATCGGCTGACCAAGCCCAGGACGCCGAGAACCAACGGCATGGTCGAGAGGTTCAATGGTCGCATAGCCGATGTCCTGAAGAC
CCACAGGTTCGACAGCCGCGAGGACATGGAGCAGACCTTGCTGCGCTATGTGGCCTTGTACAATCACCAACTGCCGCAATCAGCGCTGGGCAGCAAGACG
CCTATGCAGGCCATGAAAGAGTGGCATCAGCAGCACCCGCATCTGTTTCACAAGAGGCCATATGATCGTCCGGGATGCGACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 116 | 1087 | + | No |
Chemistry : DDE
ORF sequence :
MSMALHKNARTTPAVRAEIAASSQTASVLAQRYGITEQTVYKWKKREVFVDRCHTAHRLQTVLTPAQETVVVHLRRTLLLPLDDLLAVTREFLCPDVSRS
GLDRCLRRHGVGNLDALKPREPTVTHQAFKSYEPGYVHMDVKYLPQMRDESRRRYLFVAIDRATRWVFVQLKANKTAASAQAFLKTLHKACPIRINKLLT
DNGKEFTDRLFASGERQASGNHEFDQLCQALDIEHRLTKPRTPRTNGMVERFNGRIADVLKTHRFDSREDMEQTLLRYVALYNHQLPQSALGSKTPMQAM
KEWHQQHPHLFHKRPYDRPGCDR
GLDRCLRRHGVGNLDALKPREPTVTHQAFKSYEPGYVHMDVKYLPQMRDESRRRYLFVAIDRATRWVFVQLKANKTAASAQAFLKTLHKACPIRINKLLT
DNGKEFTDRLFASGERQASGNHEFDQLCQALDIEHRLTKPRTPRTNGMVERFNGRIADVLKTHRFDSREDMEQTLLRYVALYNHQLPQSALGSKTPMQAM
KEWHQQHPHLFHKRPYDRPGCDR
Blast result :
Comments
ISVei2 is 41% aa similar to IS481v2. There is no stop codon.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P.(2007) Direct submission GenBank.