ISRhosp6

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008269 ND Rhodococcus sp.
Rhodococcus sp. RHA1
DNA section
IS Length : 1096 bp

Ends


IR Length : 26/33

IRL : TGTACTGACCACGGACGTTGGTGACGGCGTGGCGAGGTGACATAGAGAAG
IRR : TGTACTGACCTGGGAGGTTGGGTACGCGGGTGGCGGGTGGTTGGCCGCCG

Insertion site


Left flankDirect repeatRight flankDR Length
CATATCAGTCTAGTAGCCG0

DNA sequence

TGTACTGACCACGGACGTTGGTGACGGCGTGGCGAGGTGACATAGAGAAGACCTCCGAGTGAAGTGCGAGCTGTCTAGGAACGCATCACTCACTCAGGAG
GTCTTCGTGGTCCACCGTAATGCCCCGTTGTCCGAAACGGGTCGCCTGCGCCTTGCTCAATATGTCGTTGATGATGGGTGGCCGCTGCGGCGGGCTGCTG
AACGGTTCCAGGTCGCGGTCACCACCGCAGCACGCTGGAGCGCTCGTTACCGCGCCGAGGGGCCGGCCGGGATGGCCGATCGCAGCTCACGGCCACATCG
CAGCCCGAACCAGACCCCGACGCGCACCGAGCGGCGCATCATCAAGGTCCGCGTCATCCGCCGCTGGGGTCCGGCCCGGATCGCGTATCTGCTGGGTCTG
AATGTTTCGACAGTGCACAAGGTCCTGAGCCGGTACGGGTTGGCTCGACTGCGGTGGCTCGACCGCCCGACCGGACGGGTGATCCGTCGCATGCACTCAC
CGCACTGCGGCGATCTCGTTCATGTCGATGTCAAGAAACTGGGCAAGATCCCCGCCGGCGGCGGATGGCGGAAGGTCGGTCGCTCGGCAGGCAGCCGCAA
TGCCCGGGCCGACAAAAGCAGCGGCGAGGTCGACAAGTACTACCGTCCGGTCCGCGGCTACCACTTCCTGCACACCGCGATCGACGCACACTCACGGTTG
GCCTACTCCGAACTGTTGGGCGACGAACGCAAAGCCACCGCCGCCGCGTTCTGGCTACGCGCCAACGCGTGGTTCACCGAGCACGGCATCACGGTCGAAA
AGGTGTTGACCGACAACGGTTCCTGCTACCGATCACACGCGTTCCGAGACGCACTCGGTGAGATCAAGCATCGCCGAACCCGCCCCTACCGACCCCAAAC
CAACGGCAAAGTCGAACGCTTCCACCGCACTCTGGCCGACGAATGGGCCTACGCCCGCCTCTACACCAGCGACCGCGAACGCTGCGACGAGTTCCCGCGA
TGGCTGCACACCTACAATTACCACCGAGGCCACACCGCACTCGGCGGCCAACCACCCGCCACCCGCGTACCCAACCTCCCAGGTCAGTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1045 bp329 aa471091+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVHRNAPLSETGRLRLAQYVVDDGWPLRRAAERFQVAVTTAARWSARYRAEGPAGMADRSSRPHRSPNQTPTRTERRIIKVRVIRRWGPARIAYLLGLNV
STVHKVLSRYGLARLRWLDRPTGRVIRRMHSPHCGDLVHVDVKKLGKIPAGGGWRKVGRSAGSRNARADKSSGEVDKYYRPVRGYHFLHTAIDAHSRLAY
SELLGDERKATAAAFWLRANAWFTEHGITVEKVLTDNGSCYRSHAFRDALGEIKHRRTRPYRPQTNGKVERFHRTLADEWAYARLYTSDRERCDEFPRWL
HTYNYHRGHTALGGQPPATRVPNLPGQYT

 

Blast result :
Comments
ISRhosp6 is 73% aa similar to ISAni1. The Stop codon is after the IRR.
References
1] McLeod,M.P.(2006) Proc. Natl. Acad. Sci. U.S.A In press