ISRhosp6
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008269 | ND | Rhodococcus sp. | Rhodococcus sp. RHA1 |
DNA section
IS Length : 1096 bp
Ends
IR Length : 26/33
IRL : TGTACTGACCACGGACGTTGGTGACGGCGTGGCGAGGTGACATAGAGAAG
IRR : TGTACTGACCTGGGAGGTTGGGTACGCGGGTGGCGGGTGGTTGGCCGCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATATCAGT | CTAGTAGCCG | 0 |
DNA sequence
TGTACTGACCACGGACGTTGGTGACGGCGTGGCGAGGTGACATAGAGAAGACCTCCGAGTGAAGTGCGAGCTGTCTAGGAACGCATCACTCACTCAGGAG
GTCTTCGTGGTCCACCGTAATGCCCCGTTGTCCGAAACGGGTCGCCTGCGCCTTGCTCAATATGTCGTTGATGATGGGTGGCCGCTGCGGCGGGCTGCTG
AACGGTTCCAGGTCGCGGTCACCACCGCAGCACGCTGGAGCGCTCGTTACCGCGCCGAGGGGCCGGCCGGGATGGCCGATCGCAGCTCACGGCCACATCG
CAGCCCGAACCAGACCCCGACGCGCACCGAGCGGCGCATCATCAAGGTCCGCGTCATCCGCCGCTGGGGTCCGGCCCGGATCGCGTATCTGCTGGGTCTG
AATGTTTCGACAGTGCACAAGGTCCTGAGCCGGTACGGGTTGGCTCGACTGCGGTGGCTCGACCGCCCGACCGGACGGGTGATCCGTCGCATGCACTCAC
CGCACTGCGGCGATCTCGTTCATGTCGATGTCAAGAAACTGGGCAAGATCCCCGCCGGCGGCGGATGGCGGAAGGTCGGTCGCTCGGCAGGCAGCCGCAA
TGCCCGGGCCGACAAAAGCAGCGGCGAGGTCGACAAGTACTACCGTCCGGTCCGCGGCTACCACTTCCTGCACACCGCGATCGACGCACACTCACGGTTG
GCCTACTCCGAACTGTTGGGCGACGAACGCAAAGCCACCGCCGCCGCGTTCTGGCTACGCGCCAACGCGTGGTTCACCGAGCACGGCATCACGGTCGAAA
AGGTGTTGACCGACAACGGTTCCTGCTACCGATCACACGCGTTCCGAGACGCACTCGGTGAGATCAAGCATCGCCGAACCCGCCCCTACCGACCCCAAAC
CAACGGCAAAGTCGAACGCTTCCACCGCACTCTGGCCGACGAATGGGCCTACGCCCGCCTCTACACCAGCGACCGCGAACGCTGCGACGAGTTCCCGCGA
TGGCTGCACACCTACAATTACCACCGAGGCCACACCGCACTCGGCGGCCAACCACCCGCCACCCGCGTACCCAACCTCCCAGGTCAGTACA
GTCTTCGTGGTCCACCGTAATGCCCCGTTGTCCGAAACGGGTCGCCTGCGCCTTGCTCAATATGTCGTTGATGATGGGTGGCCGCTGCGGCGGGCTGCTG
AACGGTTCCAGGTCGCGGTCACCACCGCAGCACGCTGGAGCGCTCGTTACCGCGCCGAGGGGCCGGCCGGGATGGCCGATCGCAGCTCACGGCCACATCG
CAGCCCGAACCAGACCCCGACGCGCACCGAGCGGCGCATCATCAAGGTCCGCGTCATCCGCCGCTGGGGTCCGGCCCGGATCGCGTATCTGCTGGGTCTG
AATGTTTCGACAGTGCACAAGGTCCTGAGCCGGTACGGGTTGGCTCGACTGCGGTGGCTCGACCGCCCGACCGGACGGGTGATCCGTCGCATGCACTCAC
CGCACTGCGGCGATCTCGTTCATGTCGATGTCAAGAAACTGGGCAAGATCCCCGCCGGCGGCGGATGGCGGAAGGTCGGTCGCTCGGCAGGCAGCCGCAA
TGCCCGGGCCGACAAAAGCAGCGGCGAGGTCGACAAGTACTACCGTCCGGTCCGCGGCTACCACTTCCTGCACACCGCGATCGACGCACACTCACGGTTG
GCCTACTCCGAACTGTTGGGCGACGAACGCAAAGCCACCGCCGCCGCGTTCTGGCTACGCGCCAACGCGTGGTTCACCGAGCACGGCATCACGGTCGAAA
AGGTGTTGACCGACAACGGTTCCTGCTACCGATCACACGCGTTCCGAGACGCACTCGGTGAGATCAAGCATCGCCGAACCCGCCCCTACCGACCCCAAAC
CAACGGCAAAGTCGAACGCTTCCACCGCACTCTGGCCGACGAATGGGCCTACGCCCGCCTCTACACCAGCGACCGCGAACGCTGCGACGAGTTCCCGCGA
TGGCTGCACACCTACAATTACCACCGAGGCCACACCGCACTCGGCGGCCAACCACCCGCCACCCGCGTACCCAACCTCCCAGGTCAGTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1045 bp | 329 aa | 47 | 1091 | + | No |
Chemistry : DDE
ORF sequence :
MVHRNAPLSETGRLRLAQYVVDDGWPLRRAAERFQVAVTTAARWSARYRAEGPAGMADRSSRPHRSPNQTPTRTERRIIKVRVIRRWGPARIAYLLGLNV
STVHKVLSRYGLARLRWLDRPTGRVIRRMHSPHCGDLVHVDVKKLGKIPAGGGWRKVGRSAGSRNARADKSSGEVDKYYRPVRGYHFLHTAIDAHSRLAY
SELLGDERKATAAAFWLRANAWFTEHGITVEKVLTDNGSCYRSHAFRDALGEIKHRRTRPYRPQTNGKVERFHRTLADEWAYARLYTSDRERCDEFPRWL
HTYNYHRGHTALGGQPPATRVPNLPGQYT
STVHKVLSRYGLARLRWLDRPTGRVIRRMHSPHCGDLVHVDVKKLGKIPAGGGWRKVGRSAGSRNARADKSSGEVDKYYRPVRGYHFLHTAIDAHSRLAY
SELLGDERKATAAAFWLRANAWFTEHGITVEKVLTDNGSCYRSHAFRDALGEIKHRRTRPYRPQTNGKVERFHRTLADEWAYARLYTSDRERCDEFPRWL
HTYNYHRGHTALGGQPPATRVPNLPGQYT
Blast result :
Comments
ISRhosp6 is 73% aa similar to ISAni1. The Stop codon is after the IRR.
References
1] McLeod,M.P.(2006) Proc. Natl. Acad. Sci. U.S.A In press