ISMav5

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_002944 ND Mycobacterium avium
Mycobacterium avium subsp. paratuberculosis K-10
DNA section
IS Length : 1357 bp

Ends


IR Length : 28/43

IRL : TGTATGACCTCGGTTGATGCTTGACGTTTCGGCTTCGGGTGATGCCTGAC
IRR : TGTTCAGAGTCGGTTGATGGGTGACATTTCTATGTCGGTTGATCCTTGAC

Insertion site


Left flankDirect repeatRight flankDR Length
TCCGTTTGTCGGGGCTCCGT0

DNA sequence

TGTATGACCTCGGTTGATGCTTGACGTTTCGGCTTCGGGTGATGCCTGACAGTGTTTCGGCTGATGCTTGACAGTTACTTCGGCTGATCCTTGACACTCC
TTCGATGAAGGAGTTAACCGTGGCCGAGCAGAGGTATCAGGCCGTGTTGGCGGTGATCAGCGATGGGTTGTCGATTTCGCTGGTTGCCGAGAAGGTAGGC
GTGTCGCGCCAGACGCTGCACGCGTGGTTGGCCCGCTATGAGGCGTCGGGCCTTGAGGGGCTGGTGGATCGGTCGCATCGGCCGGTGTCGTGTCCGCACC
AGATGCCGGCCGTGGTGGAGGCCGCCCTGTTGGAGCGGCGCCGGTCGCGGCCGTACTGGGGACCACGGCGGCTGGTGTTCGAGCTGGCTAAGCGTCGGGT
GGGTCCGGTGCCGTCGGAGTCGGCGGTGTATCGGGCCTTGGTGCGGGCGGGCATGATCGATCCGGCTTTGCGGGATCGGCGTTCGCGCAAGTGGAAACGT
TGGGAACGCGGCGCCCCGATGGAGCTGTGGCAGATGGATGTGGTGGGGGGTTTCCCGCTGGCCGATGGCACCAGCGCCAAAGCGTTGACCGGCATCGACG
ACCATTCCCGGATGTGTGTCTGCGCGCGGTTGATGGCGCGTGAGCGTACCCGCGCGGTTTGCGACGGATTGCGGGCGGCGCTGGCGGCTTACGGGGCCCC
CCAGCAGATTTTGACTGATAACGGCAAGGTGTTCACCGGCCGGTTTAACCATCCCCCGGTGGAGGTGCTCTTCGACGCGATCTGCCGGCAAAACGGCATC
GACCACCTGCTCACCCAGCCGCGTAGCCCGACGACGACAGGCAAGATTGAGCGGTTCCACCGCAGTCTGCGCGCCGAATTCCTCAGCAACACAAGGGCTT
TCTCAAATCTGAAGACGGCTCAGCAAGCCCTCGACGAATGGGTGCACTACTACAACACCGCCCGTCCGCATCAATCGCTGAACATGACCACCCCAGCCGA
ACGGTTCACCGCCACCGCCTCGCCGGTGAGCCCTGGCGACGACGTACCCGCCAGCATCGACCGAGACGGCCAGGACTGGGTCAGCCGCCGGGTAACGACC
AACGGGGTGGTCAGTGTGGCCTGGCAGCAGGTCTGCGTGGGAGCCCACTACGCCGGGGCCCGCTGCGATGTCCACGTCGACGGTGAGCTGCTGCGGTTCT
GGATCGGCGACCAGTTAGTCAAGACCGCTGCGCGCACCAACCATGCAGAGGTAAGAAACAAACGGGCCTTCCGCACCCGCGAACAGGCCTAACCACTAAC
CCAGAGTGTCAAGGATCAACCGACATAGAAATGTCACCCATCAACCGACTCTGAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1188 bp395 aa1051292+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKELTVAEQRYQAVLAVISDGLSISLVAEKVGVSRQTLHAWLARYEASGLEGLVDRSHRPVSCPHQMPAVVEAALLERRRSRPYWGPRRLVFELAKRRVG
PVPSESAVYRALVRAGMIDPALRDRRSRKWKRWERGAPMELWQMDVVGGFPLADGTSAKALTGIDDHSRMCVCARLMARERTRAVCDGLRAALAAYGAPQ
QILTDNGKVFTGRFNHPPVEVLFDAICRQNGIDHLLTQPRSPTTTGKIERFHRSLRAEFLSNTRAFSNLKTAQQALDEWVHYYNTARPHQSLNMTTPAER
FTATASPVSPGDDVPASIDRDGQDWVSRRVTTNGVVSVAWQQVCVGAHYAGARCDVHVDGELLRFWIGDQLVKTAARTNHAEVRNKRAFRTREQA

 

Blast result :
Comments
ISMav5 is 88% aa similar to ISMav2. There is no stop codon.
References
1] Li,L., Bannantine,J.P., Zhang,Q., Amonsin,A., May,B.J., Alt,D.,Banerji,N., Kanjilal,S. and Kapur,V. (2005) (er) Proc. Natl. Acad. Sci. U.S.A. In press