ISEc18

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM236323 ND Escherichia coli
Escherichia coli
DNA section
IS Length : 1020 bp

Ends


IR Length : 25/25

IRL : TGTGTGATTCATAGACATCGTTTCACTATAATGCCTTACTATGAACAGGG
IRR : TGTGTGATTCATAGACATCGTTTCAATTTTCTCAGTTCAAGTTCAAGCTT

Insertion site


Left flankDirect repeatRight flankDR Length
CCGGACATTAGATGAATATCAG2

DNA sequence

TGTGTGATTCATAGACATCGTTTCACTATAATGCCTTACTATGAACAGGGAAATTCAGCAGCGGCTACAGTGGGTAAAACTCTATGAAACGTCTAGTGAC
GCGGGGTTCGTATGCCGTCGCTGCGGTATTTCCCACCCCACATTGCGTAAATGGTGGCGCAGATATCTGGCTCAGGGCATCGCTGGTCTGGAAAGCCATA
GCCGTCGCCCTAAACATTCACCATCAACGAAAACCGGCGCTGGCGAAGTCGCTCTGATTCTGGAGTTACGTTCCCTGCGAAATTTGGGTGCAAGGAGGAT
TCAGAGCGAGTTAAAACGACTTCATGCAATCTCACTGGCAGTGGCAACGATCCACAAAGTTCTTTGCCAGAATAAGGTTAAACCTGTCGTTAAATTCCGG
CGTAAAGCAGATTTTATTCGCTACGAACGCCCTGTTCCCGGTGATCGGGTCCAGATGGATACCTGTAAAATTGGCCCCGGTTTGTATCAGTACACATCTG
TTGATGACTGCACTCGCTCCAGAGTCCTGAGACTCTACTCTCGTCGCACGGCTGCAAACACACTGGATTTTATCGATTGTGTTATTGAAGAAATGCCTTT
CCCGATACAGCGCTTACAGACAGACCGGGGAAGAGAGTTTTTTGCCGTTAAGGTGCAGGAGAAATTGAAAGAATACAGCATCAAGTTTCGTCCAAATAAG
CCAGCCTCACCTCATCTTAATGGCAAAGTTGAACGTTCTCAAAAGACAGACAAAGCCGAGTTTTACGCTACCGTAGACCTCTCAACTGATGACCTGAAAG
AACTGCTGGCAGAATGGCAGCATTACTATAACTGGGAACGCCCTCATAGCGCTCACAACGGTAAAACTCCGATGGAGCGCTACTTCGAACTTGCAGAGCA
AACACCATACTCTGATGCCGTTCACGCAAGCTATCAGCCCAATGAAGAGCATATACAGGAACAGAATTACAAGCTTGAACTTGAACTGAGAAAATTGAAA
CGATGTCTATGAATCACACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa101241+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNREIQQRLQWVKLYETSSDAGFVCRRCGISHPTLRKWWRRYLAQGIAGLESHSRRPKHSPSTKTGAGEVALILELRSLRNLGARRIQSELKRLHAISLA
VATIHKVLCQNKVKPVVKFRRKADFIRYERPVPGDRVQMDTCKIGPGLYQYTSVDDCTRSRVLRLYSRRTAANTLDFIDCVIEEMPFPIQRLQTDRGREF
FAVKVQEKLKEYSIKFRPNKPASPHLNGKVERSQKTDKAEFYATVDLSTDDLKELLAEWQHYYNWERPHSAHNGKTPMERYFELAEQTPYSDAVHASYQP
NEEHIQEQNYKLELELRKLKRCL

 

Blast result :
Comments
ISEc18 is 81% (ORF) aa similar to ISVch1.
References
1] Hejnova,J., Pages,D., Rusniok,C., Glaser,P., Sebo,P. and Buchrieser,C.(2006) Direct submission GenBank.