ISEc18
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AM236323 | ND | Escherichia coli | Escherichia coli |
DNA section
IS Length : 1020 bp
Ends
IR Length : 25/25
IRL : TGTGTGATTCATAGACATCGTTTCACTATAATGCCTTACTATGAACAGGG
IRR : TGTGTGATTCATAGACATCGTTTCAATTTTCTCAGTTCAAGTTCAAGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGGACATTA | GA | TGAATATCAG | 2 |
DNA sequence
TGTGTGATTCATAGACATCGTTTCACTATAATGCCTTACTATGAACAGGGAAATTCAGCAGCGGCTACAGTGGGTAAAACTCTATGAAACGTCTAGTGAC
GCGGGGTTCGTATGCCGTCGCTGCGGTATTTCCCACCCCACATTGCGTAAATGGTGGCGCAGATATCTGGCTCAGGGCATCGCTGGTCTGGAAAGCCATA
GCCGTCGCCCTAAACATTCACCATCAACGAAAACCGGCGCTGGCGAAGTCGCTCTGATTCTGGAGTTACGTTCCCTGCGAAATTTGGGTGCAAGGAGGAT
TCAGAGCGAGTTAAAACGACTTCATGCAATCTCACTGGCAGTGGCAACGATCCACAAAGTTCTTTGCCAGAATAAGGTTAAACCTGTCGTTAAATTCCGG
CGTAAAGCAGATTTTATTCGCTACGAACGCCCTGTTCCCGGTGATCGGGTCCAGATGGATACCTGTAAAATTGGCCCCGGTTTGTATCAGTACACATCTG
TTGATGACTGCACTCGCTCCAGAGTCCTGAGACTCTACTCTCGTCGCACGGCTGCAAACACACTGGATTTTATCGATTGTGTTATTGAAGAAATGCCTTT
CCCGATACAGCGCTTACAGACAGACCGGGGAAGAGAGTTTTTTGCCGTTAAGGTGCAGGAGAAATTGAAAGAATACAGCATCAAGTTTCGTCCAAATAAG
CCAGCCTCACCTCATCTTAATGGCAAAGTTGAACGTTCTCAAAAGACAGACAAAGCCGAGTTTTACGCTACCGTAGACCTCTCAACTGATGACCTGAAAG
AACTGCTGGCAGAATGGCAGCATTACTATAACTGGGAACGCCCTCATAGCGCTCACAACGGTAAAACTCCGATGGAGCGCTACTTCGAACTTGCAGAGCA
AACACCATACTCTGATGCCGTTCACGCAAGCTATCAGCCCAATGAAGAGCATATACAGGAACAGAATTACAAGCTTGAACTTGAACTGAGAAAATTGAAA
CGATGTCTATGAATCACACA
GCGGGGTTCGTATGCCGTCGCTGCGGTATTTCCCACCCCACATTGCGTAAATGGTGGCGCAGATATCTGGCTCAGGGCATCGCTGGTCTGGAAAGCCATA
GCCGTCGCCCTAAACATTCACCATCAACGAAAACCGGCGCTGGCGAAGTCGCTCTGATTCTGGAGTTACGTTCCCTGCGAAATTTGGGTGCAAGGAGGAT
TCAGAGCGAGTTAAAACGACTTCATGCAATCTCACTGGCAGTGGCAACGATCCACAAAGTTCTTTGCCAGAATAAGGTTAAACCTGTCGTTAAATTCCGG
CGTAAAGCAGATTTTATTCGCTACGAACGCCCTGTTCCCGGTGATCGGGTCCAGATGGATACCTGTAAAATTGGCCCCGGTTTGTATCAGTACACATCTG
TTGATGACTGCACTCGCTCCAGAGTCCTGAGACTCTACTCTCGTCGCACGGCTGCAAACACACTGGATTTTATCGATTGTGTTATTGAAGAAATGCCTTT
CCCGATACAGCGCTTACAGACAGACCGGGGAAGAGAGTTTTTTGCCGTTAAGGTGCAGGAGAAATTGAAAGAATACAGCATCAAGTTTCGTCCAAATAAG
CCAGCCTCACCTCATCTTAATGGCAAAGTTGAACGTTCTCAAAAGACAGACAAAGCCGAGTTTTACGCTACCGTAGACCTCTCAACTGATGACCTGAAAG
AACTGCTGGCAGAATGGCAGCATTACTATAACTGGGAACGCCCTCATAGCGCTCACAACGGTAAAACTCCGATGGAGCGCTACTTCGAACTTGCAGAGCA
AACACCATACTCTGATGCCGTTCACGCAAGCTATCAGCCCAATGAAGAGCATATACAGGAACAGAATTACAAGCTTGAACTTGAACTGAGAAAATTGAAA
CGATGTCTATGAATCACACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 1012 | 41 | + | No |
Chemistry : DDE
ORF sequence :
MNREIQQRLQWVKLYETSSDAGFVCRRCGISHPTLRKWWRRYLAQGIAGLESHSRRPKHSPSTKTGAGEVALILELRSLRNLGARRIQSELKRLHAISLA
VATIHKVLCQNKVKPVVKFRRKADFIRYERPVPGDRVQMDTCKIGPGLYQYTSVDDCTRSRVLRLYSRRTAANTLDFIDCVIEEMPFPIQRLQTDRGREF
FAVKVQEKLKEYSIKFRPNKPASPHLNGKVERSQKTDKAEFYATVDLSTDDLKELLAEWQHYYNWERPHSAHNGKTPMERYFELAEQTPYSDAVHASYQP
NEEHIQEQNYKLELELRKLKRCL
VATIHKVLCQNKVKPVVKFRRKADFIRYERPVPGDRVQMDTCKIGPGLYQYTSVDDCTRSRVLRLYSRRTAANTLDFIDCVIEEMPFPIQRLQTDRGREF
FAVKVQEKLKEYSIKFRPNKPASPHLNGKVERSQKTDKAEFYATVDLSTDDLKELLAEWQHYYNWERPHSAHNGKTPMERYFELAEQTPYSDAVHASYQP
NEEHIQEQNYKLELELRKLKRCL
Blast result :
Comments
ISEc18 is 81% (ORF) aa similar to ISVch1.
References
1] Hejnova,J., Pages,D., Rusniok,C., Glaser,P., Sebo,P. and Buchrieser,C.(2006) Direct submission GenBank.