ISPosp6

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007948 ND Polaromonas sp.
Polaromonas sp.
DNA section
IS Length : 1026 bp

Ends


IR Length : 20/23

IRL : TGTAGTTTCCCAAGAGGTTGTTCACCCGAGGTGAAGGAAGATGGAGGTTC
IRR : TGTAGTTTCTCACGACGTTGTTCCCATCAAATCCGAGGCGAGAAGCTGGA

Insertion site


Left flankDirect repeatRight flankDR Length
CAGCGCCTGCGCTAGAGCGCCGGGCT6

DNA sequence

TGTAGTTTCCCAAGAGGTTGTTCACCCGAGGTGAAGGAAGATGGAGGTTCTGACATCTCCCAAACCCCTTCAGGACTCCCCGGATGAACATCCACAAGAA
TGCCTCAATGACGCCCAAAGGTCGAGCCCATTTGGTTCAAGAAATTGCCCGGATTGGTCTGAAGCCAGCGGCTGCAGCCGCTGGCTTGAGTCCCCGCACG
GCCCGCAAGTGGCAGCAACGTTATGCTCAGGAAGGCCGCGCCGGACTGCTTGACCGCAGTTCCCGGCCTCTGGTTTGCCCGCAGCGCAGCTGCGCCAGCA
AAATCGAGCGGGCCGTGCGCTTGCGCAGGACTCAGCGCCTGACCTATGAGCGCATTGCCGAGCGAGTGGGGCTGTCGCGAAGCGCTATTGCACGGGCCTG
CAAGGCCGCCGGCGCAGCCAAGCTGCCCGCCTTTCAGAATGCGCCACCTGTGGTGCGCTATGAGCGCGCCAGCCCCGGTGAGTTACTGCACCTGGACACC
AAGAAACTACACCGCTTTGACAAGCCGGGCCACCGCGTCACGGGTGACCGCACCCAGAACACGCCCCGGGCGGGCTCACAGGCGCTGCATGTGGCCATCG
ACGATCACTCCAGGGTGGGGTTTAGCCTGCTGCTGCCTGATGAGACGGCGCGCTGTGCCTGCGCTCACCTGCTGGCAGCGCTGCGCTACTACAAGGCCTT
GGGGGTGCGCGTTGCGCAGGTGATGACCGATAACGGCTCGGCTTACAAATCAAAGCGCTTTGCCAAGCTGCTGCGCCGCCTGGGGATCAGGCACATCCGC
ACGCGCCCTTACACCCCACGCACCAACGGCAAAGCCGAACGATTCATCCAGACCTTGCTGCGCGAATGGGCCTACGCCTTCATCTACCCCGATTCAGATG
CTCGGGCCCATGAACTGGAGCCCTGGATGCATCACTACAACTTTCGCAGGCCCCACTCAGCGACCTCCCACCGCCCTCCAGCTTCTCGCCTCGGATTTGA
TGGGAACAACGTCGTGAGAAACTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa841031+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNIHKNASMTPKGRAHLVQEIARIGLKPAAAAAGLSPRTARKWQQRYAQEGRAGLLDRSSRPLVCPQRSCASKIERAVRLRRTQRLTYERIAERVGLSRS
AIARACKAAGAAKLPAFQNAPPVVRYERASPGELLHLDTKKLHRFDKPGHRVTGDRTQNTPRAGSQALHVAIDDHSRVGFSLLLPDETARCACAHLLAAL
RYYKALGVRVAQVMTDNGSAYKSKRFAKLLRRLGIRHIRTRPYTPRTNGKAERFIQTLLREWAYAFIYPDSDARAHELEPWMHHYNFRRPHSATSHRPPA
SRLGFDGNNVVRNYS

 

Blast result :
Comments
IS ISPosp6 is 63% aa similar to IS481v2. The stop Codon is in the DR.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Munk,A.C., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I. and Richardson,P.
(2006) Direct submission Genbank.