ISPosp6
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007948 | ND | Polaromonas sp. | Polaromonas sp. |
DNA section
IS Length : 1026 bp
Ends
IR Length : 20/23
IRL : TGTAGTTTCCCAAGAGGTTGTTCACCCGAGGTGAAGGAAGATGGAGGTTC
IRR : TGTAGTTTCTCACGACGTTGTTCCCATCAAATCCGAGGCGAGAAGCTGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGCGCCTGC | GCTAGA | GCGCCGGGCT | 6 |
DNA sequence
TGTAGTTTCCCAAGAGGTTGTTCACCCGAGGTGAAGGAAGATGGAGGTTCTGACATCTCCCAAACCCCTTCAGGACTCCCCGGATGAACATCCACAAGAA
TGCCTCAATGACGCCCAAAGGTCGAGCCCATTTGGTTCAAGAAATTGCCCGGATTGGTCTGAAGCCAGCGGCTGCAGCCGCTGGCTTGAGTCCCCGCACG
GCCCGCAAGTGGCAGCAACGTTATGCTCAGGAAGGCCGCGCCGGACTGCTTGACCGCAGTTCCCGGCCTCTGGTTTGCCCGCAGCGCAGCTGCGCCAGCA
AAATCGAGCGGGCCGTGCGCTTGCGCAGGACTCAGCGCCTGACCTATGAGCGCATTGCCGAGCGAGTGGGGCTGTCGCGAAGCGCTATTGCACGGGCCTG
CAAGGCCGCCGGCGCAGCCAAGCTGCCCGCCTTTCAGAATGCGCCACCTGTGGTGCGCTATGAGCGCGCCAGCCCCGGTGAGTTACTGCACCTGGACACC
AAGAAACTACACCGCTTTGACAAGCCGGGCCACCGCGTCACGGGTGACCGCACCCAGAACACGCCCCGGGCGGGCTCACAGGCGCTGCATGTGGCCATCG
ACGATCACTCCAGGGTGGGGTTTAGCCTGCTGCTGCCTGATGAGACGGCGCGCTGTGCCTGCGCTCACCTGCTGGCAGCGCTGCGCTACTACAAGGCCTT
GGGGGTGCGCGTTGCGCAGGTGATGACCGATAACGGCTCGGCTTACAAATCAAAGCGCTTTGCCAAGCTGCTGCGCCGCCTGGGGATCAGGCACATCCGC
ACGCGCCCTTACACCCCACGCACCAACGGCAAAGCCGAACGATTCATCCAGACCTTGCTGCGCGAATGGGCCTACGCCTTCATCTACCCCGATTCAGATG
CTCGGGCCCATGAACTGGAGCCCTGGATGCATCACTACAACTTTCGCAGGCCCCACTCAGCGACCTCCCACCGCCCTCCAGCTTCTCGCCTCGGATTTGA
TGGGAACAACGTCGTGAGAAACTACA
TGCCTCAATGACGCCCAAAGGTCGAGCCCATTTGGTTCAAGAAATTGCCCGGATTGGTCTGAAGCCAGCGGCTGCAGCCGCTGGCTTGAGTCCCCGCACG
GCCCGCAAGTGGCAGCAACGTTATGCTCAGGAAGGCCGCGCCGGACTGCTTGACCGCAGTTCCCGGCCTCTGGTTTGCCCGCAGCGCAGCTGCGCCAGCA
AAATCGAGCGGGCCGTGCGCTTGCGCAGGACTCAGCGCCTGACCTATGAGCGCATTGCCGAGCGAGTGGGGCTGTCGCGAAGCGCTATTGCACGGGCCTG
CAAGGCCGCCGGCGCAGCCAAGCTGCCCGCCTTTCAGAATGCGCCACCTGTGGTGCGCTATGAGCGCGCCAGCCCCGGTGAGTTACTGCACCTGGACACC
AAGAAACTACACCGCTTTGACAAGCCGGGCCACCGCGTCACGGGTGACCGCACCCAGAACACGCCCCGGGCGGGCTCACAGGCGCTGCATGTGGCCATCG
ACGATCACTCCAGGGTGGGGTTTAGCCTGCTGCTGCCTGATGAGACGGCGCGCTGTGCCTGCGCTCACCTGCTGGCAGCGCTGCGCTACTACAAGGCCTT
GGGGGTGCGCGTTGCGCAGGTGATGACCGATAACGGCTCGGCTTACAAATCAAAGCGCTTTGCCAAGCTGCTGCGCCGCCTGGGGATCAGGCACATCCGC
ACGCGCCCTTACACCCCACGCACCAACGGCAAAGCCGAACGATTCATCCAGACCTTGCTGCGCGAATGGGCCTACGCCTTCATCTACCCCGATTCAGATG
CTCGGGCCCATGAACTGGAGCCCTGGATGCATCACTACAACTTTCGCAGGCCCCACTCAGCGACCTCCCACCGCCCTCCAGCTTCTCGCCTCGGATTTGA
TGGGAACAACGTCGTGAGAAACTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 84 | 1031 | + | No |
Chemistry : DDE
ORF sequence :
MNIHKNASMTPKGRAHLVQEIARIGLKPAAAAAGLSPRTARKWQQRYAQEGRAGLLDRSSRPLVCPQRSCASKIERAVRLRRTQRLTYERIAERVGLSRS
AIARACKAAGAAKLPAFQNAPPVVRYERASPGELLHLDTKKLHRFDKPGHRVTGDRTQNTPRAGSQALHVAIDDHSRVGFSLLLPDETARCACAHLLAAL
RYYKALGVRVAQVMTDNGSAYKSKRFAKLLRRLGIRHIRTRPYTPRTNGKAERFIQTLLREWAYAFIYPDSDARAHELEPWMHHYNFRRPHSATSHRPPA
SRLGFDGNNVVRNYS
AIARACKAAGAAKLPAFQNAPPVVRYERASPGELLHLDTKKLHRFDKPGHRVTGDRTQNTPRAGSQALHVAIDDHSRVGFSLLLPDETARCACAHLLAAL
RYYKALGVRVAQVMTDNGSAYKSKRFAKLLRRLGIRHIRTRPYTPRTNGKAERFIQTLLREWAYAFIYPDSDARAHELEPWMHHYNFRRPHSATSHRPPA
SRLGFDGNNVVRNYS
Blast result :
Comments
IS ISPosp6 is 63% aa similar to IS481v2. The stop Codon is in the DR.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Munk,A.C., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I. and Richardson,P.
(2006) Direct submission Genbank.
(2006) Direct submission Genbank.