ISRpe1
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY612845 | ND | Rickettsia peacockii | Rickettsia peacockii |
DNA section
IS Length : 1189 bp
Ends
IR Length : 26/38
IRL : TGTAATAGTTGAGATTATATCTTACATTTAGTAAAATAAATTAATTATTA
IRR : TGTAGAAGTCAAGATTTGATCTTACAGACACTATAAATTTTGCACCTGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGTAATTAA | AAC | CTTGCAACTG | 3 |
DNA sequence
TGTAATAGTTGAGATTATATCTTACATTTAGTAAAATAAATTAATTATTAAATGGAGATGAAAAATGAACTTAAATCAAAAAATAATAAAGCCAAAAATA
GGGTTACTAGAACTAGCTAAGAGTCTTGGTAGCATATCATCAGCATGTAAAGCGATGGGCTATAGTAGAGATAGTTATTACAGATTTAAAGCACTGTATG
AAACTGGTGGCGAAGAGGCATTGTATGAAATTAGTCGAAGAAAGCCAATAATAGCGAATAGAGTTGATCCAGCGATAGAGAAAGCAGTAATGGATATGGC
AATAGAATATCCAGCATATGGTCAGCTAAGAGTATCAAATGAGCTTAAGAAGAGCGGTATACTTGTATCGCCTGGAGGAGTGCGATCAATTTGGTTACGT
AATGATTTAAACAATATCAGTAAAAGGCTTAAAGCATTAGAAGCAAAGATGGCTCAGGATGGTATTGTTCTTACTGAATCTCAATTACAAGTGCTAGAGG
AGCGTCGTAATGAAAGAGAAGCTCATGGAGAAACTGAGACGCAGCATCCAGGTTATCTAGGATGTCAGGATACGTATTATGTAGGTAATTTCAAAGGTAT
AGGTAAGGTTTATTCTCAGGTATTTATTGATAGCTATACTAGGGTAGCTGATGCTAAACTATATACTGATAAAACAGCTTTAACTGCTGCTGATATGCTT
AATGACCGCGTGTTACCATGGTACGAGACCCAAGGGATACCAATACTTCGTATTCTTACAGATCGTGGGTCAGAATATAAGGGGAATATAGAGCATCATG
CTTTTGAGTTGTTTCTAAGTATCGAAGGTATAGAGCATACTACAACTAAGGCATATTCTCCCCAAACAAATGGTATGTGTGAGCGTTTTAATAAAACCAT
GAAACAAGAATTCTTTGATACAGCTATGCGGAAAAAGATTTATACAGATCTTGATGATTTACAATTAGATCTTGATATTTGGTTAGAGCATTTCAATAAT
GAGCGACCACATTCAGGAAAATATTGTTATGGAAAAACTCCTATGCAAACTTTTAAGGATAGTAGAAAATTAGCTGTTGAAAAGAATAATGAAATCTTGT
ATCTTGAATACGTCTCTGACAGTCAAAATGTAACTGACAATCAGGTGCAAAATTTATAGTGTCTGTAAGATCAAATCTTGACTTCTACA
GGGTTACTAGAACTAGCTAAGAGTCTTGGTAGCATATCATCAGCATGTAAAGCGATGGGCTATAGTAGAGATAGTTATTACAGATTTAAAGCACTGTATG
AAACTGGTGGCGAAGAGGCATTGTATGAAATTAGTCGAAGAAAGCCAATAATAGCGAATAGAGTTGATCCAGCGATAGAGAAAGCAGTAATGGATATGGC
AATAGAATATCCAGCATATGGTCAGCTAAGAGTATCAAATGAGCTTAAGAAGAGCGGTATACTTGTATCGCCTGGAGGAGTGCGATCAATTTGGTTACGT
AATGATTTAAACAATATCAGTAAAAGGCTTAAAGCATTAGAAGCAAAGATGGCTCAGGATGGTATTGTTCTTACTGAATCTCAATTACAAGTGCTAGAGG
AGCGTCGTAATGAAAGAGAAGCTCATGGAGAAACTGAGACGCAGCATCCAGGTTATCTAGGATGTCAGGATACGTATTATGTAGGTAATTTCAAAGGTAT
AGGTAAGGTTTATTCTCAGGTATTTATTGATAGCTATACTAGGGTAGCTGATGCTAAACTATATACTGATAAAACAGCTTTAACTGCTGCTGATATGCTT
AATGACCGCGTGTTACCATGGTACGAGACCCAAGGGATACCAATACTTCGTATTCTTACAGATCGTGGGTCAGAATATAAGGGGAATATAGAGCATCATG
CTTTTGAGTTGTTTCTAAGTATCGAAGGTATAGAGCATACTACAACTAAGGCATATTCTCCCCAAACAAATGGTATGTGTGAGCGTTTTAATAAAACCAT
GAAACAAGAATTCTTTGATACAGCTATGCGGAAAAAGATTTATACAGATCTTGATGATTTACAATTAGATCTTGATATTTGGTTAGAGCATTTCAATAAT
GAGCGACCACATTCAGGAAAATATTGTTATGGAAAAACTCCTATGCAAACTTTTAAGGATAGTAGAAAATTAGCTGTTGAAAAGAATAATGAAATCTTGT
ATCTTGAATACGTCTCTGACAGTCAAAATGTAACTGACAATCAGGTGCAAAATTTATAGTGTCTGTAAGATCAAATCTTGACTTCTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1095 bp | 364 aa | 65 | 1159 | + | No |
Chemistry : DDE
ORF sequence :
MNLNQKIIKPKIGLLELAKSLGSISSACKAMGYSRDSYYRFKALYETGGEEALYEISRRKPIIANRVDPAIEKAVMDMAIEYPAYGQLRVSNELKKSGIL
VSPGGVRSIWLRNDLNNISKRLKALEAKMAQDGIVLTESQLQVLEERRNEREAHGETETQHPGYLGCQDTYYVGNFKGIGKVYSQVFIDSYTRVADAKLY
TDKTALTAADMLNDRVLPWYETQGIPILRILTDRGSEYKGNIEHHAFELFLSIEGIEHTTTKAYSPQTNGMCERFNKTMKQEFFDTAMRKKIYTDLDDLQ
LDLDIWLEHFNNERPHSGKYCYGKTPMQTFKDSRKLAVEKNNEILYLEYVSDSQNVTDNQVQNL
VSPGGVRSIWLRNDLNNISKRLKALEAKMAQDGIVLTESQLQVLEERRNEREAHGETETQHPGYLGCQDTYYVGNFKGIGKVYSQVFIDSYTRVADAKLY
TDKTALTAADMLNDRVLPWYETQGIPILRILTDRGSEYKGNIEHHAFELFLSIEGIEHTTTKAYSPQTNGMCERFNKTMKQEFFDTAMRKKIYTDLDDLQ
LDLDIWLEHFNNERPHSGKYCYGKTPMQTFKDSRKLAVEKNNEILYLEYVSDSQNVTDNQVQNL
Blast result :
Comments
ISRpe1 is 77% aa similar to ISSod13.
References
1] Simser,J.A., Rahman,M.S., Dreher-Lesnick,S.M. and Azad,A.F. (2005) Mol. Microbiol. 58 (1), 71-79.