ISRpe1

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY612845 ND Rickettsia peacockii
Rickettsia peacockii
DNA section
IS Length : 1189 bp

Ends


IR Length : 26/38

IRL : TGTAATAGTTGAGATTATATCTTACATTTAGTAAAATAAATTAATTATTA
IRR : TGTAGAAGTCAAGATTTGATCTTACAGACACTATAAATTTTGCACCTGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CAGTAATTAAAACCTTGCAACTG3

DNA sequence

TGTAATAGTTGAGATTATATCTTACATTTAGTAAAATAAATTAATTATTAAATGGAGATGAAAAATGAACTTAAATCAAAAAATAATAAAGCCAAAAATA
GGGTTACTAGAACTAGCTAAGAGTCTTGGTAGCATATCATCAGCATGTAAAGCGATGGGCTATAGTAGAGATAGTTATTACAGATTTAAAGCACTGTATG
AAACTGGTGGCGAAGAGGCATTGTATGAAATTAGTCGAAGAAAGCCAATAATAGCGAATAGAGTTGATCCAGCGATAGAGAAAGCAGTAATGGATATGGC
AATAGAATATCCAGCATATGGTCAGCTAAGAGTATCAAATGAGCTTAAGAAGAGCGGTATACTTGTATCGCCTGGAGGAGTGCGATCAATTTGGTTACGT
AATGATTTAAACAATATCAGTAAAAGGCTTAAAGCATTAGAAGCAAAGATGGCTCAGGATGGTATTGTTCTTACTGAATCTCAATTACAAGTGCTAGAGG
AGCGTCGTAATGAAAGAGAAGCTCATGGAGAAACTGAGACGCAGCATCCAGGTTATCTAGGATGTCAGGATACGTATTATGTAGGTAATTTCAAAGGTAT
AGGTAAGGTTTATTCTCAGGTATTTATTGATAGCTATACTAGGGTAGCTGATGCTAAACTATATACTGATAAAACAGCTTTAACTGCTGCTGATATGCTT
AATGACCGCGTGTTACCATGGTACGAGACCCAAGGGATACCAATACTTCGTATTCTTACAGATCGTGGGTCAGAATATAAGGGGAATATAGAGCATCATG
CTTTTGAGTTGTTTCTAAGTATCGAAGGTATAGAGCATACTACAACTAAGGCATATTCTCCCCAAACAAATGGTATGTGTGAGCGTTTTAATAAAACCAT
GAAACAAGAATTCTTTGATACAGCTATGCGGAAAAAGATTTATACAGATCTTGATGATTTACAATTAGATCTTGATATTTGGTTAGAGCATTTCAATAAT
GAGCGACCACATTCAGGAAAATATTGTTATGGAAAAACTCCTATGCAAACTTTTAAGGATAGTAGAAAATTAGCTGTTGAAAAGAATAATGAAATCTTGT
ATCTTGAATACGTCTCTGACAGTCAAAATGTAACTGACAATCAGGTGCAAAATTTATAGTGTCTGTAAGATCAAATCTTGACTTCTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1095 bp364 aa651159+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNLNQKIIKPKIGLLELAKSLGSISSACKAMGYSRDSYYRFKALYETGGEEALYEISRRKPIIANRVDPAIEKAVMDMAIEYPAYGQLRVSNELKKSGIL
VSPGGVRSIWLRNDLNNISKRLKALEAKMAQDGIVLTESQLQVLEERRNEREAHGETETQHPGYLGCQDTYYVGNFKGIGKVYSQVFIDSYTRVADAKLY
TDKTALTAADMLNDRVLPWYETQGIPILRILTDRGSEYKGNIEHHAFELFLSIEGIEHTTTKAYSPQTNGMCERFNKTMKQEFFDTAMRKKIYTDLDDLQ
LDLDIWLEHFNNERPHSGKYCYGKTPMQTFKDSRKLAVEKNNEILYLEYVSDSQNVTDNQVQNL

 

Blast result :
Comments
ISRpe1 is 77% aa similar to ISSod13.
References
1] Simser,J.A., Rahman,M.S., Dreher-Lesnick,S.M. and Azad,A.F. (2005) Mol. Microbiol. 58 (1), 71-79.